View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_29 (Length: 340)
Name: NF15178_high_29
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 44490214 - 44490398
Alignment:
| Q |
1 |
ttctattatggtgaatatttttggttgtgtcatcacgtcgactagccagcagttagttatcactatatttgttagcttgattgatatatatgatatgtac |
100 |
Q |
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| T |
44490214 |
ttctattatggtgaatttttttggttgtgtcatcacgtcgactagccagcagtta----tcactatatttgttagcttgattgatat----gatatgta- |
44490304 |
T |
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| Q |
101 |
tactattattatatcatggcttccatgtaatgtcaatgttggttggtgatcagttgaataacccacctcatgtgaatataatatagaaaaatgcaacatt |
200 |
Q |
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| T |
44490305 |
-----ttattatatcatggcttccatgtaatgtcaatgttggttggtgatcagttgaataacccacctc-----------atatagaaaaatgcaacatt |
44490388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 44490718 - 44490821
Alignment:
| Q |
229 |
attgaatacatcatttttcaatacaaaatttatataaattctctaaggacattctttatcattagtatttttattttactttgaaaagtctaggagggtc |
328 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44490718 |
attgaatacatcatttttcaatataaaatttatataaattctctaaggacattctttatcattagtatttttattttcctttgaaaagtctaggagggtg |
44490817 |
T |
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| Q |
329 |
tgtg |
332 |
Q |
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|||| |
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| T |
44490818 |
tgtg |
44490821 |
T |
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