View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_33 (Length: 316)
Name: NF15178_high_33
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_33 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 33221210 - 33220915
Alignment:
| Q |
19 |
ctcaggttttgaagaatccatagtgttgtttggtgtacacaatgtggatcattacgtgtggttatcatctgttattgtagtaattatattagcaatatgc |
118 |
Q |
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| T |
33221210 |
ctcaggttttgaagaatccatagtgttgtttggtgtacacaatgtggatcattacgtgtggttatcatctgttattgtagtaattatattagcaat--gc |
33221113 |
T |
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| Q |
119 |
ataattttctttttaaaccttaatctactaagataacacataaagtagaaaataattacctgacaagaaatcagcttcagtgtaggaaattctggtttga |
218 |
Q |
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| T |
33221112 |
ataattttctttttaaaccttaatctactaagataacacataaagtagaaaataattacctgacaagaaatcagcttcagtgtaggaaattctggtttga |
33221013 |
T |
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| Q |
219 |
aactgattacagaaatctttggaatagtctgtaaaacaatttagaaagttagttgtgctttttaaagaactaatatatacataaaagggtatcaaatc |
316 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33221012 |
aactggttacagaaatctttggaatagtctgtaaaacaatttagaaagttagttgtgctttttaaagaactaatatatacatcaaagggtatcaaatc |
33220915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 33236800 - 33236754
Alignment:
| Q |
168 |
aaataatta-cctgacaagaaatcagcttcagtgtaggaaattctgg |
213 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
33236800 |
aaataattaacctgacaagaaatcagcttcagtgtgcgaaattctgg |
33236754 |
T |
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