View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15178_high_35 (Length: 298)

Name: NF15178_high_35
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15178_high_35
NF15178_high_35
[»] chr5 (25 HSPs)
chr5 (18-209)||(26312819-26313010)
chr5 (162-244)||(21542056-21542138)
chr5 (153-247)||(39698564-39698658)
chr5 (153-244)||(21522776-21522867)
chr5 (153-244)||(21533342-21533433)
chr5 (153-244)||(18592099-18592190)
chr5 (152-247)||(19579724-19579819)
chr5 (153-204)||(21576698-21576749)
chr5 (162-247)||(21814284-21814369)
chr5 (145-206)||(27932288-27932349)
chr5 (160-247)||(7677728-7677815)
chr5 (153-208)||(15382536-15382591)
chr5 (153-208)||(21191009-21191064)
chr5 (153-240)||(32766885-32766972)
chr5 (153-247)||(6401521-6401615)
chr5 (153-205)||(31084382-31084434)
chr5 (153-205)||(43001859-43001911)
chr5 (160-208)||(43564932-43564980)
chr5 (153-192)||(17088358-17088397)
chr5 (153-208)||(30098991-30099046)
chr5 (153-208)||(39268551-39268606)
chr5 (153-198)||(21194076-21194121)
chr5 (160-205)||(30098391-30098436)
chr5 (145-198)||(30183621-30183674)
chr5 (153-193)||(14873588-14873628)
[»] chr3 (27 HSPs)
chr3 (153-247)||(4987233-4987327)
chr3 (164-247)||(14832122-14832205)
chr3 (153-208)||(20503516-20503571)
chr3 (153-208)||(40993288-40993343)
chr3 (160-247)||(41961599-41961686)
chr3 (153-208)||(55401126-55401181)
chr3 (153-247)||(34185065-34185159)
chr3 (145-206)||(7171554-7171615)
chr3 (145-242)||(8039769-8039866)
chr3 (155-208)||(10955003-10955056)
chr3 (162-247)||(14209136-14209221)
chr3 (160-247)||(14216915-14217002)
chr3 (160-247)||(14223044-14223131)
chr3 (153-247)||(25064932-25065024)
chr3 (153-198)||(15999963-16000008)
chr3 (153-198)||(27505312-27505357)
chr3 (145-205)||(10690197-10690257)
chr3 (147-247)||(28812538-28812638)
chr3 (153-208)||(35222989-35223044)
chr3 (153-247)||(15796236-15796330)
chr3 (144-198)||(16192666-16192720)
chr3 (153-191)||(40052380-40052418)
chr3 (148-189)||(21720842-21720883)
chr3 (160-209)||(26492165-26492214)
chr3 (153-198)||(28918064-28918109)
chr3 (153-205)||(3631738-3631790)
chr3 (145-193)||(17005553-17005601)
[»] chr1 (36 HSPs)
chr1 (153-247)||(47989520-47989614)
chr1 (145-205)||(1486649-1486709)
chr1 (169-245)||(27471524-27471600)
chr1 (153-247)||(6427487-6427581)
chr1 (153-247)||(9828067-9828161)
chr1 (146-247)||(6332693-6332794)
chr1 (162-247)||(32461415-32461499)
chr1 (160-240)||(40917779-40917859)
chr1 (153-244)||(6612113-6612204)
chr1 (160-247)||(18556405-18556492)
chr1 (162-205)||(31015091-31015134)
chr1 (153-208)||(37598882-37598937)
chr1 (154-209)||(40181921-40181976)
chr1 (153-247)||(5944306-5944400)
chr1 (153-247)||(25934639-25934733)
chr1 (145-194)||(9690218-9690267)
chr1 (148-193)||(16164252-16164297)
chr1 (145-198)||(18190053-18190106)
chr1 (163-208)||(29163344-29163389)
chr1 (153-247)||(25361909-25361999)
chr1 (160-208)||(46348343-46348391)
chr1 (153-208)||(5898219-5898274)
chr1 (159-198)||(6427596-6427635)
chr1 (153-208)||(22515840-22515895)
chr1 (153-208)||(40258886-40258941)
chr1 (153-208)||(42359402-42359457)
chr1 (154-208)||(1815308-1815362)
chr1 (153-247)||(31694652-31694746)
chr1 (162-208)||(51410076-51410122)
chr1 (153-206)||(16297234-16297287)
chr1 (153-190)||(27965953-27965990)
chr1 (149-190)||(28268134-28268175)
chr1 (190-247)||(44482253-44482310)
chr1 (153-189)||(15765828-15765864)
chr1 (184-244)||(34315738-34315798)
chr1 (145-205)||(41597415-41597475)
[»] chr7 (23 HSPs)
chr7 (154-247)||(24339665-24339758)
chr7 (162-247)||(11831455-11831540)
chr7 (163-240)||(25822685-25822762)
chr7 (153-198)||(43027417-43027462)
chr7 (153-205)||(5409784-5409836)
chr7 (163-247)||(21560526-21560610)
chr7 (148-205)||(3294252-3294309)
chr7 (160-208)||(598259-598307)
chr7 (145-204)||(21864863-21864922)
chr7 (153-247)||(26033403-26033497)
chr7 (153-247)||(32308143-32308237)
chr7 (153-205)||(32093967-32094020)
chr7 (153-205)||(9778559-9778611)
chr7 (153-205)||(13770750-13770802)
chr7 (160-208)||(21880203-21880251)
chr7 (153-208)||(15680860-15680915)
chr7 (145-208)||(18212978-18213041)
chr7 (153-208)||(32287416-32287471)
chr7 (145-183)||(38134340-38134378)
chr7 (162-207)||(8234198-8234243)
chr7 (153-198)||(29763142-29763187)
chr7 (145-189)||(24105748-24105792)
chr7 (145-189)||(38804494-38804538)
[»] chr6 (26 HSPs)
chr6 (160-247)||(16766720-16766807)
chr6 (155-247)||(8365463-8365555)
chr6 (153-208)||(34595185-34595240)
chr6 (145-205)||(3209453-3209513)
chr6 (153-205)||(17327603-17327655)
chr6 (153-208)||(28152149-28152204)
chr6 (153-247)||(8714003-8714097)
chr6 (154-247)||(5970051-5970144)
chr6 (154-247)||(9107313-9107406)
chr6 (162-247)||(9522914-9522999)
chr6 (162-247)||(16488541-16488626)
chr6 (145-205)||(12696383-12696443)
chr6 (153-247)||(10339067-10339162)
chr6 (145-208)||(28715346-28715409)
chr6 (145-208)||(33001234-33001297)
chr6 (153-247)||(7248381-7248475)
chr6 (153-247)||(18367859-18367953)
chr6 (153-247)||(31384943-31385036)
chr6 (145-198)||(23130406-23130459)
chr6 (145-208)||(24645532-24645595)
chr6 (153-208)||(32978852-32978907)
chr6 (164-198)||(9658940-9658974)
chr6 (153-207)||(17841542-17841596)
chr6 (153-198)||(8776921-8776966)
chr6 (163-244)||(17435225-17435306)
chr6 (145-189)||(26178623-26178667)
[»] scaffold0623 (1 HSPs)
scaffold0623 (153-247)||(5938-6032)
[»] chr8 (26 HSPs)
chr8 (145-247)||(8343339-8343441)
chr8 (153-247)||(22651999-22652093)
chr8 (153-247)||(26902117-26902211)
chr8 (153-248)||(29447466-29447561)
chr8 (153-247)||(29447052-29447146)
chr8 (153-247)||(29510246-29510340)
chr8 (153-198)||(22943302-22943347)
chr8 (153-218)||(34450974-34451039)
chr8 (145-206)||(36450699-36450760)
chr8 (164-208)||(5813643-5813687)
chr8 (145-205)||(16641914-16641974)
chr8 (160-247)||(15816078-15816165)
chr8 (153-208)||(24205761-24205816)
chr8 (153-208)||(33405337-33405392)
chr8 (153-247)||(11927028-11927122)
chr8 (153-247)||(11944688-11944782)
chr8 (171-247)||(2572016-2572092)
chr8 (153-205)||(3025605-3025657)
chr8 (145-189)||(8343037-8343081)
chr8 (153-208)||(14134750-14134805)
chr8 (153-208)||(40332242-40332297)
chr8 (162-208)||(3951498-3951544)
chr8 (153-247)||(11803282-11803376)
chr8 (153-205)||(126300-126352)
chr8 (163-243)||(12570687-12570766)
chr8 (145-205)||(24858070-24858130)
[»] chr4 (35 HSPs)
chr4 (153-208)||(23292939-23292994)
chr4 (153-247)||(19482691-19482785)
chr4 (153-247)||(30982820-30982914)
chr4 (153-247)||(5414114-5414208)
chr4 (153-247)||(36635347-36635436)
chr4 (162-247)||(903945-904030)
chr4 (160-247)||(22234839-22234926)
chr4 (153-208)||(49431077-49431132)
chr4 (153-247)||(24613643-24613737)
chr4 (145-190)||(18575988-18576033)
chr4 (167-208)||(19097861-19097902)
chr4 (163-208)||(34306767-34306812)
chr4 (153-205)||(3947714-3947766)
chr4 (163-247)||(19312358-19312442)
chr4 (153-197)||(28000683-28000727)
chr4 (188-244)||(51701284-51701340)
chr4 (153-208)||(2361928-2361983)
chr4 (153-208)||(12895227-12895282)
chr4 (145-208)||(15724488-15724551)
chr4 (145-196)||(47264060-47264111)
chr4 (161-231)||(11326592-11326661)
chr4 (153-247)||(30522858-30522951)
chr4 (144-242)||(30838238-30838336)
chr4 (153-194)||(482196-482237)
chr4 (153-198)||(715558-715603)
chr4 (153-198)||(752884-752929)
chr4 (163-208)||(8423681-8423726)
chr4 (145-218)||(16184872-16184945)
chr4 (153-194)||(28084589-28084630)
chr4 (153-198)||(29205529-29205574)
chr4 (145-197)||(7214471-7214523)
chr4 (160-208)||(12797298-12797346)
chr4 (153-205)||(28964201-28964253)
chr4 (153-189)||(30094083-30094119)
chr4 (167-247)||(46083947-46084027)
[»] scaffold0136 (1 HSPs)
scaffold0136 (153-247)||(3791-3885)
[»] scaffold0086 (1 HSPs)
scaffold0086 (153-247)||(2951-3045)
[»] scaffold0019 (1 HSPs)
scaffold0019 (153-247)||(71748-71842)
[»] chr2 (27 HSPs)
chr2 (145-247)||(34784916-34785018)
chr2 (153-247)||(37419766-37419860)
chr2 (153-208)||(2438672-2438727)
chr2 (153-244)||(11223806-11223896)
chr2 (153-208)||(19942316-19942371)
chr2 (145-205)||(22084761-22084824)
chr2 (153-242)||(35056896-35056985)
chr2 (145-208)||(12224274-12224337)
chr2 (145-208)||(20242672-20242735)
chr2 (153-208)||(24009346-24009401)
chr2 (153-208)||(26769573-26769628)
chr2 (153-247)||(30717472-30717566)
chr2 (160-206)||(38117119-38117165)
chr2 (153-193)||(14996172-14996212)
chr2 (160-208)||(15972924-15972972)
chr2 (167-247)||(36096331-36096411)
chr2 (153-208)||(18840966-18841021)
chr2 (153-208)||(27084320-27084375)
chr2 (153-208)||(28596520-28596575)
chr2 (145-244)||(36756278-36756377)
chr2 (145-204)||(37411189-37411248)
chr2 (153-243)||(44860347-44860437)
chr2 (164-205)||(34993946-34993987)
chr2 (148-192)||(2331870-2331914)
chr2 (153-189)||(10535698-10535734)
chr2 (184-236)||(18054776-18054828)
chr2 (145-205)||(41843500-41843560)
[»] scaffold0050 (1 HSPs)
scaffold0050 (153-208)||(70329-70384)
[»] scaffold0003 (2 HSPs)
scaffold0003 (160-247)||(241617-241704)
scaffold0003 (145-190)||(236919-236964)
[»] scaffold0652 (1 HSPs)
scaffold0652 (153-208)||(415-470)
[»] scaffold0083 (1 HSPs)
scaffold0083 (145-208)||(45475-45538)
[»] scaffold0036 (1 HSPs)
scaffold0036 (153-247)||(9689-9783)
[»] scaffold0361 (1 HSPs)
scaffold0361 (145-206)||(14580-14641)
[»] scaffold0053 (1 HSPs)
scaffold0053 (163-208)||(8849-8894)
[»] scaffold0044 (1 HSPs)
scaffold0044 (170-247)||(53203-53280)
[»] scaffold0004 (1 HSPs)
scaffold0004 (153-206)||(92875-92928)
[»] scaffold0008 (1 HSPs)
scaffold0008 (153-245)||(263314-263406)
[»] scaffold0512 (1 HSPs)
scaffold0512 (145-208)||(4981-5044)
[»] scaffold0171 (1 HSPs)
scaffold0171 (145-247)||(23534-23636)
[»] scaffold0793 (1 HSPs)
scaffold0793 (153-198)||(4834-4879)
[»] scaffold0022 (1 HSPs)
scaffold0022 (145-198)||(90904-90957)
[»] scaffold0380 (1 HSPs)
scaffold0380 (153-205)||(8655-8707)
[»] scaffold0039 (1 HSPs)
scaffold0039 (160-204)||(84922-84966)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 26313010 - 26312819
Alignment:
Q  18 atgtggagggtaattggatagattatcagcagacatgttggtggcacaaaccctctcggcaattggcaagtcaattggaacatttgcgcagccaaggatc 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26313010 atgtggagggtagttggatagattatcagcagacatgttggtggcacaaaccctctcggcaattggcaagtcaattggaacatttgcgaagccaaggatc 26312911  T
Q  118 cattgaaccaacatttcttgacatcataagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgat 209  Q
    |||||||||||| ||| || ||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||| ||||||||||    
T  26312910 cattgaaccaacgtttattaacatcataagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgat 26312819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 21542138 - 21542056
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||  ||||||  | || |||||||||||||||||||||    
T  21542138 ggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 39698658 - 39698564
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||||||||| ||||||| || || |||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  39698658 acactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgat 39698564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 21522867 - 21522776
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||| | |||||||||||||||||||| | |||||||||||||| |||||||||  ||||||  | |  |||||||||||||||||||||    
T  21522867 acactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21522776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 21533433 - 21533342
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||| | |||||||||||||||||||| | |||||||||||||| |||||||||  ||||||  | |  |||||||||||||||||||||    
T  21533433 acactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21533342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 18592190 - 18592099
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||| |||||||||  ||||||    |||| |||||||| ||||||||||    
T  18592190 acactcatcgaattagccgtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgt 18592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 19579819 - 19579724
Alignment:
Q  152 tacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||| ||||||||||||||||||||||| |||||  |||||||| |||||| ||  ||||||  | || ||||||| |||| |||||||||||    
T  19579819 tacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgat 19579724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 21576698 - 21576749
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 204  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  21576698 acactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgaca 21576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 21814369 - 21814284
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||| ||||||||||| ||| |||||||||||||||| |||||||||  ||||||  | |||| ||||||||||| ||| ||||||    
T  21814369 ggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgat 21814284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 27932349 - 27932288
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    ||||||| |||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  27932349 aagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacacc 27932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 7677815 - 7677728
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||||||||| |||| ||| |||||  ||||||||  ||||||  | || | ||||| ||||||||||||||||    
T  7677815 tcggattaggcgtgtcccggtgtcggacatgtgacgtgtcagacaccgacacgacaccgacacttctaattgcactgaattatgtgat 7677728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 15382591 - 15382536
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| | |||||||    
T  15382591 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccaacaccga 15382536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 21191009 - 21191064
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||| ||| ||||||||| |||| |||||||||    
T  21191009 acactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccga 21191064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 32766885 - 32766972
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaatt 240  Q
    |||||| || |||||| ||| ||| |||||| |||||||||||| |||||||||||  |||||| || |||| |||||||| ||||||    
T  32766885 acactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattacattgaatt 32766972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 6401615 - 6401521
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||| |||||| |||| |||||||||||||||||||| |||||| ||  ||||||  | |||| ||||||||||| ||| ||||||    
T  6401615 acactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtattttgtgat 6401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 31084434 - 31084382
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| ||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  31084434 acactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacac 31084382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 43001911 - 43001859
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| ||||||||||||||||| |||||  |||||||||||||| ||||||    
T  43001911 acactcctcggattaggcgtgtccaggtgtttgacacgtgtcgtgtccgacac 43001859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 43564980 - 43564932
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||||||||||||||| ||| ||||| |||||||| |||||||||    
T  43564980 tcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccga 43564932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 17088397 - 17088358
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtg 192  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  17088397 acactcctcggattaggcgtgtcccggtgtcggacacgtg 17088358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 30098991 - 30099046
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| | |||| ||||||||||| |||||||||||||||||| | |||||||||    
T  30098991 acactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccga 30099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 39268551 - 39268606
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||| ||||| ||||| |||||||| | |||||||    
T  39268551 acactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccga 39268606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 21194076 - 21194121
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||||||| ||||||||| |||| |||||||||    
T  21194076 acactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgt 21194121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 30098436 - 30098391
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||||||| |||||| |||||| |||||||||||||| ||||||    
T  30098436 tcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 30183674 - 30183621
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    ||||||| |||||  ||| |||||||||||||| ||||| ||||||||||||||    
T  30183674 aagcacagacacttctcgaattaggcgtgtcccagtgtcggacacgtgtcgtgt 30183621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 14873628 - 14873588
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgt 193  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  14873628 acactcctcggattaggcgtgtcccggtgttggacacgtgt 14873588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 4987233 - 4987327
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | |||||||  || ||| || || ||||||||||||||||||||||||    
T  4987233 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgat 4987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 14832205 - 14832122
Alignment:
Q  164 attaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||  ||||||  | || |||||||||| ||| |||||||||    
T  14832205 attaggcgtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgat 14832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 20503571 - 20503516
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  20503571 acactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccga 20503516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 40993288 - 40993343
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  40993288 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccga 40993343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 41961599 - 41961686
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||| ||||| |||||||||||||| ||| |||||  ||||||  | || ||||||||||| |||| |||||||    
T  41961599 tcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaataatgtgat 41961686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 55401181 - 55401126
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  55401181 acactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 55401126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 34185065 - 34185159
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||| |||||  ||  ||||||  | || ||||||||||||||||| ||||||    
T  34185065 acactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactgaattgtgtgat 34185159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 7171615 - 7171554
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    ||||| |||||||| | |||||||||||||| ||||||| |||||||||||||| |||||||    
T  7171615 aagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacacc 7171554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 8039769 - 8039866
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattat 242  Q
    ||||||| | |||| |||||||| ||||||||||||||| |||| || || ||| |||||||||  ||||||  | |||| |||||||||||||||||    
T  8039769 aagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattat 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 10955056 - 10955003
Alignment:
Q  155 actcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||| |||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccga 10955003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 14209221 - 14209136
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||| || ||||| ||||  ||||||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  14209221 ggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgat 14209136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 14217002 - 14216915
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||| ||||||| |||||  ||||||||||||| ||||||  |  ||||||| | || ||||||||||||||||||| ||||    
T  14217002 tcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgat 14216915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 14223131 - 14223044
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||| ||||||| |||||  ||||||||||||| ||||||  |  ||||||| | || ||||||||||||||||||| ||||    
T  14223131 tcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgat 14223044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 25065024 - 25064932
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||| |  ||||||||||||||||||||||||||||| ||||||| |  ||| || || |||  |||||||||| |||||||||||    
T  25065024 acactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacaccaacacgataccaacaca--taattacactaaattatgtgat 25064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 15999963 - 16000008
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||    
T  15999963 acactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgt 16000008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 27505357 - 27505312
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||||    
T  27505357 acactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgt 27505312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 10690197 - 10690257
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||||||| || |||||||||| ||||| | ||||||||||||||| |||| ||||||    
T  10690197 aagcacatacattcctcggattaggtgtgtcgccgtgtcagacacgtgttgtgtccgacac 10690257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 28812638 - 28812538
Alignment:
Q  147 gcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtga 246  Q
    ||||| |||||| ||||||||||||||||| | |||| |||| || ||||||  |||||| |  ||||||  | || ||||| |||||||||||||||||    
T  28812638 gcacagacactcctcggattaggcgtgtcctgctgtcggacatgtatcgtgtctgacaccaacacgacaccgacacttgtaactacactgaattatgtga 28812539  T
Q  247 t 247  Q
    |    
T  28812538 t 28812538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 35223044 - 35222989
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||| | ||||||||| |||||||||||||||| ||| |||||||||    
T  35223044 acactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccga 35222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 15796236 - 15796330
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | ||||||||||||| |||||||  ||||||||| |||| ||||||| |  ||||||  | |  ||||||||||||||||||| ||||    
T  15796236 acactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattatatgat 15796330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 16192666 - 16192720
Alignment:
Q  144 taagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||||| |||||| ||  ||||||  |||||||||||||||||||||||||||    
T  16192666 taagcacaaacactcctcatattaggtatgtcccggtgtcagacacgtgtcgtgt 16192720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 40052418 - 40052380
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgt 191  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  40052418 acactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 21720883 - 21720842
Alignment:
Q  148 cacatacactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  21720883 cacagacactcatcggattagacgtgtcccggtgtcggacac 21720842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 26492165 - 26492214
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgat 209  Q
    ||||||||| ||||||  ||||||||||| ||||||||| ||||||||||    
T  26492165 tcggattagacgtgtcttggtgtcagacatgtgtcgtgtccgacaccgat 26492214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 28918109 - 28918064
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| | |||||||||||||||| ||||| ||||||||||||||    
T  28918109 acactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgt 28918064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 3631790 - 3631738
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| ||||| ||||||||||| |||||| |||| ||||||||| ||||||    
T  3631790 acactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacac 3631738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 17005553 - 17005601
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgt 193  Q
    ||||||| |||||| |||||||||  |||||| ||||||||||||||||    
T  17005553 aagcacaaacactcctcggattagaggtgtcctggtgtcagacacgtgt 17005601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 47989614 - 47989520
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  47989614 acactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgat 47989520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 1486649 - 1486709
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  1486649 aagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 27471524 - 27471600
Alignment:
Q  169 gcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtg 245  Q
    ||||||||||||||| |||||||||||| | | ||||||||  ||||| || |||||||||||||||||||||||||    
T  27471524 gcgtgtcccggtgtcggacacgtgtcgtatccaacaccgatatgacaccaacacatgtaattacactgaattatgtg 27471600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 6427581 - 6427487
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| |||| || |  ||||||  | || |||| ||||| |||||||||||||    
T  6427581 acactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaattatgtgat 6427487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 9828161 - 9828067
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||  ||||| ||  ||||||  | ||||  |||||||||||||||||||||    
T  9828161 acactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgat 9828067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 6332794 - 6332693
Alignment:
Q  146 agcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtg 245  Q
    |||||| ||||||||||||| |||| ||||| ||||| ||||| || |||  ||||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  6332794 agcacagacactcatcggatcaggcatgtcctggtgttagacatgtatcgcattcgacaccaacacgacaccgatacttgtaattacactgaattatgtg 6332695  T
Q  246 at 247  Q
    ||    
T  6332694 at 6332693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 32461415 - 32461499
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  | |||| || || |||||||||| | |||||||||||    
T  32461415 ggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaattatgtgat 32461499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 40917859 - 40917779
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaatt 240  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||  ||||||  | || |||||||||||| ||||    
T  40917859 tcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaatt 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 6612113 - 6612204
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||| | ||||||||||||||| |||||| ||||| | |||||| ||||| |||  ||||||  | || |||||||||||||||||||||    
T  6612113 acactccttggattaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgt 6612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 18556405 - 18556492
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||| ||||| || |||||||| ||  |||||||   |||||| ||||| |||||||||| | |||||||||||    
T  18556405 tcggattaggcgtgtcccagtgtcggatacgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaattatgtgat 18556492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 31015134 - 31015091
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  31015134 ggattaggcgtgtcccgatgtcagacacgtgtcgtgtccgacac 31015091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 37598937 - 37598882
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||| |||||||||    
T  37598937 acactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccga 37598882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 40181976 - 40181921
Alignment:
Q  154 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgat 209  Q
    ||||| |||||||||||||||||||||||  ||||||||| |||| ||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgat 40181921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 5944400 - 5944306
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||||||| |||||||||| |||| |||| |||| || || |||  ||||||  | || | ||||||||||||||||||||||    
T  5944400 acactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaattatgtgat 5944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 25934733 - 25934639
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||| |||||| |||| |||||||||||||||||||| |||||||||  ||| ||  | |||| ||||||||||| ||| ||||||    
T  25934733 acactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgtattttgtgat 25934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 9690218 - 9690267
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtc 194  Q
    ||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  9690218 aagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtc 9690267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 16164252 - 16164297
Alignment:
Q  148 cacatacactcatcggattaggcgtgtcccggtgtcagacacgtgt 193  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||    
T  16164252 cacatacactcttcggattaggcgtgtcctggtgtcggacacgtgt 16164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 18190053 - 18190106
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||| ||||||||| |||||||||| ||||||||||||| ||||||||| ||||    
T  18190053 aagcgcatacactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgt 18190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 29163344 - 29163389
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||    
T  29163344 gattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccga 29163389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 25361999 - 25361909
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||||  ||| |||||||| ||||  |||||||| |||||||||  ||||||  | |||| ||||||||||||||||||||||    
T  25361999 acactcttcggattagg--tgttccggtgtcggaca--tgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtgat 25361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 46348343 - 46348391
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||| ||||||| |||||||||||||| |||||||||    
T  46348343 tcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 46348391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 5898219 - 5898274
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||| |||||||||||||  ||||||||||||||  ||||||||    
T  5898219 acactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccga 5898274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 6427635 - 6427596
Alignment:
Q  159 atcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  6427635 atcggattaggcgtgtcccggtatcggacacgtgtcgtgt 6427596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 22515840 - 22515895
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||| ||||||| || | ||||||||| |||||||||    
T  22515840 acactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccga 22515895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 40258886 - 40258941
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||||||||||| |||||| |||| |||||||||  ||||||||    
T  40258886 acactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccga 40258941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 42359402 - 42359457
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||||||| |||||  ||| ||| |||||||||    
T  42359402 acactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccga 42359457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 1815362 - 1815308
Alignment:
Q  154 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||| || ||||||||||||||||||||| |||| |||||||||  ||||||||    
T  1815362 cactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccga 1815308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 31694652 - 31694746
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| || |||||||||||| ||||||||  | | |||| |||| |||||||||  ||||||  | || |||||||| |||||||||||||||    
T  31694652 acactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgat 31694746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 51410122 - 51410076
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||||||||| ||||||| || ||||||||||| |||||||||    
T  51410122 ggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccga 51410076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 16297234 - 16297287
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    |||||| ||||||||||||||||| |||||| |||||  ||||||| |||||||    
T  16297234 acactcctcggattaggcgtgtcctggtgtcggacacacgtcgtgtccgacacc 16297287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 27965953 - 27965990
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacg 190  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  27965953 acactcctcggattaggcgtgtcccggtgtcaggcacg 27965990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 28268134 - 28268175
Alignment:
Q  149 acatacactcatcggattaggcgtgtcccggtgtcagacacg 190  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  28268134 acatacactcctcggattaggcgtatcccggtgtcaaacacg 28268175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 44482310 - 44482253
Alignment:
Q  190 gtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||| |||||||||  ||||||  | |||| ||||||||||||||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgat 44482253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 15765864 - 15765828
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    |||||| |||||||||||||||||| |||||||||||    
T  15765864 acactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 34315798 - 34315738
Alignment:
Q  184 agacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    ||||| |||||||||||||||||||| ||| ||  | |||| ||||||||| |||||||||    
T  34315798 agacatgtgtcgtgttcgacaccgatacgataccgacacatataattacaccgaattatgt 34315738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 41597415 - 41597475
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| | |||| | |||| |||| |||||||||||||||||||| ||||||    
T  41597415 aagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacac 41597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 24339758 - 24339665
Alignment:
Q  154 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  24339758 cactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgat 24339665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 11831540 - 11831455
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||||||  ||||||||| |||| |||||||| |||||||||| |||||||||||| |||||||||||| |||||| ||||    
T  11831540 ggattaggcgtgctccggtgtcaaacacatgtcgtgtccgacaccgatacgacacgaatacttgtaattacactaaattatatgat 11831455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 25822762 - 25822685
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaatt 240  Q
    |||||||| ||||||| ||||||||||||||||||| ||| |||||| ||||||  | || |||||||||||||||||    
T  25822762 gattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactgaatt 25822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 43027417 - 43027462
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43027417 acactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 43027462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 5409784 - 5409836
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  5409784 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 21560610 - 21560526
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||||||  |||||| ||||| || ||||||| ||||||||| ||||||  | || ||||||||||||||||||||||||    
T  21560610 gattaggcgtgtttcggtgttagacatgtatcgtgtttgacaccgatacgacaccgacacttgtaattacactgaattatgtgat 21560526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 3294252 - 3294309
Alignment:
Q  148 cacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||| ||| ||||    
T  3294252 cacatacactcttcggattaggcgtgtcccggtgttggacacgtgtcgtcttcaacac 3294309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 598307 - 598259
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  598307 tcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccga 598259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 21864922 - 21864863
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 204  Q
    ||||||| |||||| ||| ||||| |||||||||||||| |||||||||||||| |||||    
T  21864922 aagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgaca 21864863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 26033403 - 26033497
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||| ||||| |||| || |||||||||| |||  ||||||||  ||| ||  | || ||||||||||||||||||||||||    
T  26033403 acactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaattatgtgat 26033497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 32308237 - 32308143
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||  ||||| ||||||| |||| ||||||||| | |||||||  ||||||  | ||||  |||||||||||||||||||||    
T  32308237 acactcctcggattagctgtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgat 32308143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 32093967 - 32094020
Alignment:
Q  153 acactcatcggattaggcgtgtccc-ggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||| ||||||    
T  32093967 acactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacac 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 9778611 - 9778559
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| | |||||||||||||||||||||| ||||||||| |||| ||||||    
T  9778611 acactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 13770802 - 13770750
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| ||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  13770802 acactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacac 13770750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 21880251 - 21880203
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||||||||||| |||||| |||| ||||||||| |||||||||    
T  21880251 tcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccga 21880203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 15680915 - 15680860
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||| ||||| |||||| ||||||| |||||||||||||| |||||||||    
T  15680915 acactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 15680860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 18212978 - 18213041
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||| |||||| |||||| ||||||||||| |||||||| | | ||||||| |||||||||    
T  18212978 aagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccgacaccga 18213041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 32287416 - 32287471
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||| ||||||||||||| ||||| |||| ||| |||||||||    
T  32287416 acactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccga 32287471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 38134340 - 38134378
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtc 183  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  38134340 aagcacatacactcctcggattaggcgtgtcccgatgtc 38134378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 8234243 - 8234198
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccg 207  Q
    |||||||||||||| ||||||| |||| ||||||||| ||||||||    
T  8234243 ggattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccg 8234198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 29763142 - 29763187
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| ||||||||||||||||| | |||| ||||||||||||||    
T  29763142 acactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgt 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 24105792 - 24105748
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    ||||||| |||||| |||| ||||||||||||||||||| |||||    
T  24105792 aagcacaaacactcctcgggttaggcgtgtcccggtgtcggacac 24105748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 38804494 - 38804538
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    |||||||||||||| ||||||||||| |||||||| ||| |||||    
T  38804494 aagcacatacactcctcggattaggcatgtcccggcgtcggacac 38804538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 16766807 - 16766720
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||  ||||||  | || ||||||||||||||||||||||||    
T  16766807 tcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgat 16766720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 8365463 - 8365555
Alignment:
Q  155 actcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||| |||||||||||||||||| ||||| |||||||||||||| ||| |||||  ||||||  | || ||||||||||| ||||||||||||    
T  8365463 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgtgat 8365555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 34595240 - 34595185
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  34595240 acactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccga 34595185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 3209513 - 3209453
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  3209513 aagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacac 3209453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 17327603 - 17327655
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  17327603 acactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 28152204 - 28152149
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  28152204 acactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccga 28152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 8714097 - 8714003
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||| ||||||||||| |||| || | ||||||||| |||||||||  ||||||  | |  ||||||||||||||||||||||||    
T  8714097 acactcctcggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgat 8714003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 5970051 - 5970144
Alignment:
Q  154 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||| ||||||| ||||||||||| |||| || | ||||||||| |||||||||  ||||||  | |  ||||||||||||||||||||||||    
T  5970051 cactcctcggattgggcgtgtcccgatgtcggaaatgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgat 5970144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 9107313 - 9107406
Alignment:
Q  154 cactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||| |||||||||| ||||||||||||| |||||  || |||| |||||||||  ||||||  | || ||||||||||||||||| ||||||    
T  9107313 cactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgat 9107406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 9522999 - 9522914
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||| ||||||| |||||||||||  | |||||||||  | ||||  | || ||||||||||||||||||||||||    
T  9522999 ggattaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattatgtgat 9522914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 16488541 - 16488626
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||| ||||||||||| ||| |||||||||||||||| |||||||||  ||||||  | |||| ||||||||||| ||| ||||||    
T  16488541 ggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgat 16488626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 12696443 - 12696383
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| | |||| ||| |||||||||||||||||||||||||||| ||||||    
T  12696443 aagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 10339067 - 10339162
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaatt-acactgaattatgtgat 247  Q
    |||||| || ||||||||||||||| ||||| |||| ||||||||| |||||||||  || |||  | |||| ||||| |||||||||||||||||    
T  10339067 acactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactgaattatgtgat 10339162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 28715409 - 28715346
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||  ||| ||||||||||||||||||||  ||||||||||||| |||||||||    
T  28715409 aagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccga 28715346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 33001234 - 33001297
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||| |||||| | ||||||||||| |  |||||||||||||||||||||| |||||||||    
T  33001234 aagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccga 33001297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 7248475 - 7248381
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||| | |||||||||||||| ||||| ||| |||| | |||||||  |||| | || |||| ||||||| ||||||||||||||    
T  7248475 acactcctcggatttgacgtgtcccggtgtcggacacatgttgtgtccaacaccgacacgactccaacacatataattaccctgaattatgtgat 7248381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 18367953 - 18367859
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||| ||||||||||| |||||||||| |||||||||  ||||||||  ||||||  | |||| ||||||||||| ||| ||||||    
T  18367953 acactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgtgat 18367859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 31385036 - 31384943
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||||||||||||||||||||  |||||||||||||| | ||| | |  ||||||  | || ||||||||||||||||||||||||    
T  31385036 acactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaaca-ctacacgacactgacacttgtaattacactgaattatgtgat 31384943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 23130406 - 23130459
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||||||||||| || |||||||| ||||||| | |||||||||||||||||    
T  23130406 aagcacatacactcctcagattaggcatgtcccgatatcagacacgtgtcgtgt 23130459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 24645595 - 24645532
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||| |||||| ||||||||| ||||||  |||||| ||||||||||||||  ||||||||    
T  24645595 aagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccga 24645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 32978852 - 32978907
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| | ||||||| |||||||||||||| |||| ||||||||| |||||||||    
T  32978852 acactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccga 32978907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 9658974 - 9658940
Alignment:
Q  164 attaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    ||||||||||| |||||||||||||||||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgt 9658940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 17841542 - 17841596
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccg 207  Q
    |||||| |||||||||||||||| | ||||| ||||| |||||||| ||||||||    
T  17841542 acactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccg 17841596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 8776921 - 8776966
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  8776921 acactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgt 8776966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 17435306 - 17435225
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||| |||||||| |||||  ||||||||||||| ||||| |||    |||| || || |||||||||||||||||||||    
T  17435306 gattagacgtgtcccagtgtcgaacacgtgtcgtgtccgacatcgacaaaacactaacacttgtaattacactgaattatgt 17435225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 26178623 - 26178667
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    ||||||| |||||| || |||||||||||||||||||||| ||||    
T  26178623 aagcacagacactcctccgattaggcgtgtcccggtgtcaaacac 26178667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 5938 - 6032
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||  | |||| ||||||||||| ||| ||||||    
T  5938 acactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacactgcattttgtgat 6032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 8343441 - 8343339
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||  |||||   | ||||||  | || |||||||||||| ||||||||    
T  8343441 aagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacacgtgtacgacactgacacttgtaattacactaaattatgt 8343342  T
Q  245 gat 247  Q
    |||    
T  8343341 gat 8343339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 22652093 - 22651999
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||| |||||||||||||| ||||| |||||||| |||||||||  ||||||  | || |||||||| | |||||||||||||    
T  22652093 acactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgat 22651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 26902117 - 26902211
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| || ||| ||||||||||| ||| |||||||||||||||| ||||||  || ||||||  | |||| ||||||||||||||||||||||    
T  26902117 acactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaattatgtgat 26902211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 29447561 - 29447466
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgatc 248  Q
    |||||| || |||||| | |||||||||||| ||||| ||||||||  ||||||||  |||||| || |||| |||||||||| ||||||||||||    
T  29447561 acactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaattatgtgatc 29447466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 29447052 - 29447146
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | ||||||||||||||| |||||||||||| |||||||| |||||||||   |||||  | || |||| ||||| |||||||||||||    
T  29447052 acactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgat 29447146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 29510246 - 29510340
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||| ||||||||||||| |||||| ||||||| |||||||||  | ||||  | || |||||||| |||||||| ||||||    
T  29510246 acactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgat 29510340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 22943302 - 22943347
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  22943302 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt 22943347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 34450974 - 34451039
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacga 218  Q
    |||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||  ||||||||    
T  34450974 acactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgacacga 34451039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 36450699 - 36450760
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||||| ||||||| |||||||    
T  36450699 aagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacc 36450760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 5813687 - 5813643
Alignment:
Q  164 attaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  5813687 attaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccga 5813643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 16641914 - 16641974
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| |||||||||| |||||||||||| |||||| |||||||| ||||||    
T  16641914 aagcacagacactcctcggattaggtgtgtcccggtgttagacacatgtcgtgtccgacac 16641974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 15816078 - 15816165
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| |  ||||||  | || | |||||||||| |||||||||||    
T  15816078 tcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgat 15816165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 24205761 - 24205816
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||||||||| ||||||||||||| | || ||||||||||||||    
T  24205761 acactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccga 24205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 33405337 - 33405392
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||    
T  33405337 acactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccga 33405392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 11927028 - 11927122
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||||||||||||||||| || |||  || || ||||||||  |||||| |  ||||||  | |||| ||||||||||||||||||||||    
T  11927028 acactcatcggattaggcgtgtctcgatgttggatacatgtcgtgtatgacaccaacacgacaccgacacatataattacactgaattatgtgat 11927122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 11944782 - 11944688
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||||||||||||||||| ||||||| || || ||||||||  |||| | |  ||||||  | |||| |||||||||||| |||||||||    
T  11944782 acactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattacactgagttatgtgat 11944688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 2572016 - 2572092
Alignment:
Q  171 gtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||| || |||||||||||||| |||||| ||  ||||||  | || |||||||||||| |||||||||||    
T  2572016 gtgtcccggtatcggacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgat 2572092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 3025657 - 3025605
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| ||||||||| |||||| | |||||||||||||||||||| ||||||    
T  3025657 acactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacac 3025605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 8343081 - 8343037
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||    
T  8343081 aagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 14134805 - 14134750
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||| ||||||||||||| |||| | ||||||||||||||| ||||||||    
T  14134805 acactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccga 14134750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 40332297 - 40332242
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||| ||||||||||  |||||||||||||| | |||||||    
T  40332297 acactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccga 40332242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 3951498 - 3951544
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||||||| || ||||||||||||||||||||  ||||||||    
T  3951498 ggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccga 3951544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 11803376 - 11803282
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||| ||||| || ||||| |||| ||||||| | | ||||| |  | |||| || |||| ||||||||||||||||||||||    
T  11803376 acactcctcggattagacgtgtacctgtgtcggacatgtgtcgtatccaacaccaacacaacaccaacacatataattacactgaattatgtgat 11803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 126300 - 126352
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| ||||||||| ||||||||||| |  |||||||||||||| ||||||    
T  126300 acactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacac 126352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 12570687 - 12570766
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatg 243  Q
    |||||||||||||| |||||| ||||||||| ||||  ||||||||| | |||| || | || |||||||||| |||||||    
T  12570687 gattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgatac-acaccaacatatataattacacttaattatg 12570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 24858130 - 24858070
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| || ||||||||||||||||| ||  ||||| |||||||| ||||||    
T  24858130 aagcacaaacactcctctgattaggcgtgtcccggcgtgggacacatgtcgtgtccgacac 24858070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 23292939 - 23292994
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  23292939 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccga 23292994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 19482785 - 19482691
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||| | | |||||  |||||| || || ||||||||||| ||||||||||||    
T  19482785 acactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaattatgtgat 19482691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 30982820 - 30982914
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||  ||||||||  ||||||  | || | ||||||||||||| ||||||||    
T  30982820 acactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgat 30982914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 5414114 - 5414208
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | |||| ||| ||||||| |||||||||||||||||||| |||||| ||  ||||||  |||||| ||||||||||| ||| ||||||    
T  5414114 acactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcattttgtgat 5414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 36635436 - 36635347
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||  |||||       ||||||| |||| ||||||||||||||||||||||    
T  36635436 acactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacac-----tcacacgaacacatataattacactgaattatgtgat 36635347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 904030 - 903945
Alignment:
Q  162 ggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||  ||||||| ||||| ||||| |||||||| | |||||||| ||| ||  |||||| ||||||||||||||||||||||    
T  904030 ggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactgaattatgtgat 903945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 22234839 - 22234926
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||  |||||| |||||| ||||||||||||||  ||||||||  ||||||  | ||||  |||||||||||||||||||||    
T  22234839 tcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaattatgtgat 22234926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 49431132 - 49431077
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||| ||||||||||||||||  |||||||||||||| |||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccga 49431077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 24613643 - 24613737
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | ||||||| ||||||| |||||||||||||||||||||  ||||||||   |||||  | || |||| ||||| |||||||||||||    
T  24613643 acactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgtgat 24613737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 18575988 - 18576033
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacg 190  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||    
T  18575988 aagcacatacactcatcgaattaggcgtgtcccggtttcggacacg 18576033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 19097861 - 19097902
Alignment:
Q  167 aggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  19097861 aggcgtgtccccgtgtcagacacgtgtcatgttcgacaccga 19097902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 34306767 - 34306812
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||    
T  34306767 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 34306812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 3947714 - 3947766
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| |||||||||| |||||| |||||| |||||||||||||| ||||||    
T  3947714 acactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacac 3947766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 19312442 - 19312358
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||| ||||||| |||||||||||| | ||||| |||  ||||||  |||| | |||||||||||||| |||||||    
T  19312442 gattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaatcatgtgat 19312358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 28000683 - 28000727
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtg 197  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  28000683 acactcatcagattaggtgtgtctcggtgtcagacacgtgtcgtg 28000727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 51701340 - 51701284
Alignment:
Q  188 acgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||||||||||||||||||  |||||| || || |||||||||||| ||||||||    
T  51701340 acgtgtcgtgttcgacaccgacacgacactaacacttgtaattacactcaattatgt 51701284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 2361928 - 2361983
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| || ||||||| ||||| |||||||||||||| ||||||| |||||||||    
T  2361928 acactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccga 2361983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 12895227 - 12895282
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| ||||||||||||||||||| |||| || || |||||||| |||||||||    
T  12895227 acactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccga 12895282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 15724488 - 15724551
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||| |||| |||||||||||||||   |||||| ||||||||| |||| |||||||||    
T  15724488 aagcacataaactcctcggattaggcgtgttttggtgtctgacacgtgttgtgtccgacaccga 15724551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 47264111 - 47264060
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgt 196  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||| |||||||    
T  47264111 aagcacagacgctcttcggattaggcgtgtcctggtgtcagacatgtgtcgt 47264060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 11326592 - 11326661
Alignment:
Q  161 cggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaatta 231  Q
    |||||||||||||||||| |||| |||||||||  ||||||||| | || ||||||  |||||||||||||    
T  11326592 cggattaggcgtgtcccg-tgtcggacacgtgttatgttcgacatcaatacgacaccgatacatgtaatta 11326661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 30522858 - 30522951
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | ||||||| |||||| |||||||||| | |||||||||| ||| ||||| |||| | || | || || |||||||||||||||||||    
T  30522858 acactctttggattagacgtgtctcggtgtcagatatgtgtcgtgtttgacgccgatccgaccc-aacatatatagttacactgaattatgtgat 30522951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 30838336 - 30838238
Alignment:
Q  144 taagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattat 242  Q
    |||||||  |||||| |||| |||||||||||  |||||| ||||||||||| || |||||| ||  ||||||  |||| | |||||||||| ||||||    
T  30838336 taagcacggacactcctcgggttaggcgtgtcttggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaattat 30838238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 482196 - 482237
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtc 194  Q
    |||||||||||||||| ||||| | |||||||||||||||||    
T  482196 acactcatcggattagacgtgttcaggtgtcagacacgtgtc 482237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 715558 - 715603
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  715558 acactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 715603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 752884 - 752929
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  752884 acactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 752929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 8423681 - 8423726
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||||||||||||||| ||||  |||||||| |||||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccga 8423726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 16184945 - 16184872
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacga 218  Q
    ||||||| |||||| |||||||||||||||||| ||||| |||| |  |||| | |||||||||  ||||||||    
T  16184945 aagcacaaacactcctcggattaggcgtgtcccagtgtcggacaggcatcgtatgcgacaccgacacgacacga 16184872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 28084630 - 28084589
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtc 194  Q
    |||||| |||||||||||||||||| ||||| ||||||||||    
T  28084630 acactcctcggattaggcgtgtcccagtgtcggacacgtgtc 28084589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 29205574 - 29205529
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  29205574 acactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgt 29205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 7214471 - 7214523
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtg 197  Q
    ||||||| ||| |||||||||||||| | |||||||||| |||| ||||||||    
T  7214471 aagcacaaacaatcatcggattaggcatttcccggtgtcggacatgtgtcgtg 7214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 12797298 - 12797346
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||| | ||||||||||||||||| || |||||| |||||||||    
T  12797298 tcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccga 12797346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 28964201 - 28964253
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| |||||||||||||||||| ||||| || | ||||||||| ||||||    
T  28964201 acactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacac 28964253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 30094119 - 30094083
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    |||||| |||||||||||||||||||||||| |||||    
T  30094119 acactcttcggattaggcgtgtcccggtgtccgacac 30094083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 46083947 - 46084027
Alignment:
Q  167 aggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||||| | |||||||||||||||||| ||| || ||  ||||||  | |||| ||||||||||  ||||||||||    
T  46083947 aggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacactagattatgtgat 46084027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 3791 - 3885
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||||||||| || |||| |||| ||||||||| ||||||| |  ||||||  | || ||||||||||||||||||||||||    
T  3791 acactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgtgat 3885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 3045 - 2951
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||||||||| ||||||||  |||||||||||||  || |||||  ||||||  |||| |||||||||||| |||||||||||    
T  3045 acactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaaattatgtgat 2951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 71842 - 71748
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||| |||||||||||||| ||||||||| |||| |||||||||  ||||||  | ||  |||||||||||||||| ||||||    
T  71842 acactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattacactgaattgtgtgat 71748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 34784916 - 34785018
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    ||||||| |||||| ||| || ||||||||||| |||||||||| ||||||||| ||| |||||  ||||||  | |||| |||||||||| ||||||||    
T  34784916 aagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaattatgt 34785015  T
Q  245 gat 247  Q
    |||    
T  34785016 gat 34785018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 37419860 - 37419766
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| |||||||||||||||||||||||| ||||||  |||||| |||||||||  ||||||    || ||||||||||||||||| ||||||    
T  37419860 acactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattttgtgat 37419766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 2438672 - 2438727
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  2438672 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccga 2438727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 11223806 - 11223896
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    |||||| || |||||||||||||||||||||||||| ||||||||| ||||||| |   |||||  | || |||||||||||||||||||||    
T  11223806 acactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattatgt 11223896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 19942371 - 19942316
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||||||||||||||| || ||||| |||||||||    
T  19942371 acactcctcggattaggcgtgtcccggtgtcagacacatgccgtgtccgacaccga 19942316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 22084761 - 22084824
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtccc---ggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||||||||||||||||||||||   |||||||||||||||| |||| ||||||    
T  22084761 aagcacagacactcatcggattaggcgtgtcccggtggtgtcagacacgtgttgtgtccgacac 22084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 35056985 - 35056896
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattat 242  Q
    |||||| || ||||||||||||  | ||||| |||||||||||||| |||||||||  ||||||  | |||| |||||||||||||||||    
T  35056985 acactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 12224337 - 12224274
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||| |||||| | |||||||||||||||| ||||| ||||||| |||||| |||||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccga 12224274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 20242672 - 20242735
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||| |||||| |||||| ||||||||||  ||||||||||||||| |||| |||||||||    
T  20242672 aagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccga 20242735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 24009401 - 24009346
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  24009401 acactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccga 24009346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 26769628 - 26769573
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  26769628 acactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccga 26769573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 30717472 - 30717566
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| | ||||||||||| |||| |||||  ||||||||||||| ||||| |||  |||||   | || ||||||||||||||||||||||||    
T  30717472 acactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgat 30717566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 38117119 - 38117165
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||    
T  38117119 tcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacc 38117165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 14996172 - 14996212
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgt 193  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  14996172 acactcctcggattaggcgtgttccggtgtcagacacgtgt 14996212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 15972972 - 15972924
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||||| ||||||||| ||| |||||||||||||| |||||||||    
T  15972972 tcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccga 15972924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 36096331 - 36096411
Alignment:
Q  167 aggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    ||||||||||| |||||||||||||||||||| ||||| |||  ||||||  | | || ||||||||||| ||| ||||||    
T  36096331 aggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcattttgtgat 36096411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 18840966 - 18841021
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||| ||||||||||||| |||| |||||||||  ||||||||    
T  18840966 acactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccga 18841021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 27084375 - 27084320
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| || ||||||||||||| ||||||  |||||||||||||| |||||||||    
T  27084375 acactcctccgattaggcgtgtctcggtgttggacacgtgtcgtgtccgacaccga 27084320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 28596575 - 28596520
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||| ||||||  ||||| |||||||||||||| |||||||||    
T  28596575 acactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccga 28596520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 36756278 - 36756377
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    ||||||| |||||| | |||||||||||||  ||||||| |||| |||| |||||||||||  |  ||||||  | || | |||||||||||||||||||    
T  36756278 aagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattatgt 36756377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 37411189 - 37411248
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 204  Q
    |||||||  ||||| ||||| |||||||||||| ||||| |||||| |||||||||||||    
T  37411189 aagcacaggcactcctcggactaggcgtgtcccagtgtcggacacgcgtcgtgttcgaca 37411248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 44860437 - 44860347
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatg 243  Q
    |||||| ||| |||||| |||||||| |||| ||||| |||||||| | ||||| |  ||||||  | |||| ||||||||||||||||||    
T  44860437 acactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaattatg 44860347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 34993946 - 34993987
Alignment:
Q  164 attaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  34993946 attaggcgtgtcccagtgtcggacacatgtcgtgttcgacac 34993987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 2331914 - 2331870
Alignment:
Q  148 cacatacactcatcggattaggcgtgtcccggtgtcagacacgtg 192  Q
    |||| ||| |||| ||||||||||||||| |||||||||||||||    
T  2331914 cacagacattcattggattaggcgtgtcctggtgtcagacacgtg 2331870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 10535698 - 10535734
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacac 189  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  10535698 acactcctcggattaggcgtgtcctggtgtcagacac 10535734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 18054776 - 18054828
Alignment:
Q  184 agacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactg 236  Q
    ||||||| |||||||||||||||||  |||||| || |||| |||||||||||    
T  18054776 agacacgcgtcgtgttcgacaccgacacgacaccaacacatataattacactg 18054828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 41843560 - 41843500
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    ||||||| |||||| |||||| | ||||||||| ||||| ||||||||||| || ||||||    
T  41843560 aagcacagacactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgacac 41843500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 70384 - 70329
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  70384 acactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccga 70329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 241704 - 241617
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| |  ||||||  | ||   |||||||||| |||||||||||    
T  241704 tcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaattatgtgat 241617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 236919 - 236964
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacg 190  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||||    
T  236919 aagcacagacactcctcagattaggtgtgtcccggtgtcagacacg 236964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 415 - 470
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||||||||| ||||||||||||| |||||| ||||||| |||||||||    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccga 470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 45475 - 45538
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    |||||| |||| || | ||||||||| |||| |||||||||||||||||||||| |||||||||    
T  45475 aagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccga 45538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 9689 - 9783
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||| ||||||||  ||||||||| ||||||||| |||||||||  |||||| |  ||||||  | |||| |||||||||||||||| |||||    
T  9689 acactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgat 9783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 14641 - 14580
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    |||||| ||||||| |  ||||||||||||| ||||||| |||||||||||||| |||||||    
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacacc 14580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 8894 - 8849
Alignment:
Q  163 gattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||    
T  8894 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccga 8849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 53280 - 53203
Alignment:
Q  170 cgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtgat 247  Q
    |||||||||||||| |||||||||| ||| |||||||||  || |||  | || | ||||||||||||||||||||||    
T  53280 cgtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgat 53203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 92928 - 92875
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacacc 206  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  92928 acactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacacc 92875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 263314 - 263406
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgtg 245  Q
    |||||| ||||||||||||||||  ||| ||  |||||||||||||  ||||||||  ||||||  | || | ||||||||||||||||||||    
T  263314 acactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgtg 263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 4981 - 5044
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccga 208  Q
    ||||||| |||||| ||||||||||| |||| |  |||| |||||||||||||| |||||||||    
T  4981 aagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccga 5044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 23636 - 23534
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacaccgatgcgacacgaatacatgtaattacactgaattatgt 244  Q
    ||||||| |||||  | |||||| ||||||||| || || ||||| | |||||| |||||||||  ||||||  | || | |||||||||||||||||||    
T  23636 aagcacaaacacttctgggattatgcgtgtcccagtctcggacacatatcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgt 23537  T
Q  245 gat 247  Q
    |||    
T  23536 gat 23534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 4834 - 4879
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||| |||||||||||||||||| ||||| |||| |||||||||    
T  4834 acactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt 4879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 90957 - 90904
Alignment:
Q  145 aagcacatacactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgt 198  Q
    |||||||||||||||| |||||||||||||   |||||| ||||||||| ||||    
T  90957 aagcacatacactcattggattaggcgtgttttggtgtcggacacgtgttgtgt 90904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 8707 - 8655
Alignment:
Q  153 acactcatcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgacac 205  Q
    |||||| | ||||||||||| |||| ||||| |||||||||||||||| ||||    
T  8707 acactccttggattaggcgtatcccagtgtcggacacgtgtcgtgttcaacac 8655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 84922 - 84966
Alignment:
Q  160 tcggattaggcgtgtcccggtgtcagacacgtgtcgtgttcgaca 204  Q
    ||||||||||||||||| | |||| ||||||||| ||||||||||    
T  84922 tcggattaggcgtgtcctgttgtcggacacgtgttgtgttcgaca 84966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University