View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15178_high_37 (Length: 294)

Name: NF15178_high_37
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15178_high_37
NF15178_high_37
[»] chr4 (1 HSPs)
chr4 (8-294)||(44942776-44943062)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 44943062 - 44942776
Alignment:
Q  8 cgaagaatatatttgcttctccttcacatggatttccaatataattctaaatcatcagcgagctttcaaggacattttgaaatcatccactatcgaagtc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44943062 cgaacaatatatttgcttctccttcacatggatttccaatataattctaaatcatcagcgagctttcaaggacattttgaaatcatccactatcgaagtc 44942963  T
Q  108 caatttagcttccacgaagttatgatttccgttttgtctagtttcatttcaccaacatttttcacatcaaatcaaatgttcagattgttaccttcatcgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44942962 caatttagcttccacgaagttatgatttccgttttgtctagtttcatttcaccaacatttttcacatcaaatcaaatgttcagattgttaccttcatcgt 44942863  T
Q  208 acaaatcagaattgcatagtaaaaacatgcatggagaaatcaaaccgtcttcccccaactaaatcctttatgtgagtgccttaaatt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44942862 acaaatcagaattgcatagtaaaaacatgcatggagaaatcaaactgtcttcccccaactaaatcctttatgtgagtgccttaaatt 44942776  T

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