View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_38 (Length: 293)
Name: NF15178_high_38
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 54198863 - 54198587
Alignment:
| Q |
17 |
tactgcagatacttattctcagtttacttgaaacttaattaagaccaaaagatgaatggatcaatattattgaactttatattatacaggtatacctttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54198863 |
tactgcagatacttattctcagtttacttgaaacttaattaagaccaaaagatgaatggatcaatattattgaactttatattatacaggtatacctttt |
54198764 |
T |
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| Q |
117 |
caagtttatggattccatgttcaattaatactgagatgatgacgaacactgcgcagacagcagcaacagcccaagttggtgtttccttcaatgttctttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54198763 |
caagtttatggattccatgttcaattaatactgagatgatgacgaacactgcgcagacagcagcaacagcccaagttggtgtttccttcaatgttctttc |
54198664 |
T |
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| Q |
217 |
cccaggagctcctccggccatcttaatttgctttcttctttcaaacaacaatgtgtacgtttttctagtcagtctat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54198663 |
cccaggagctcctccggccatcttaatttgctttcttctttcaaacaacaatgtgtacgtttttctagtcagtctat |
54198587 |
T |
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