View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_40 (Length: 282)
Name: NF15178_high_40
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 38536617 - 38536834
Alignment:
| Q |
50 |
tttctttgtgtgcgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
149 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38536617 |
tttctttgtgtgtgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
38536716 |
T |
|
| Q |
150 |
tgtattatttcctttccatgtaattttattctcatattttctcaatgtcatttaatgatgatacttacacgctttgaatcgtttaaaaattctctaatcc |
249 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
38536717 |
tgtattatttcctttccatgtaattttattctcatcttttctcaatgtcatttaatgatgatacttacacgctttgaatcgttcataaattctctaatcc |
38536816 |
T |
|
| Q |
250 |
ttatcgtatttcatcccc |
267 |
Q |
| |
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|||||||||||||||||| |
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| T |
38536817 |
ttatcgtatttcatcccc |
38536834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 38558835 - 38559052
Alignment:
| Q |
50 |
tttctttgtgtgcgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
149 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38558835 |
tttctttgtgtgtgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
38558934 |
T |
|
| Q |
150 |
tgtattatttcctttccatgtaattttattctcatattttctcaatgtcatttaatgatgatacttacacgctttgaatcgtttaaaaattctctaatcc |
249 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
38558935 |
tgtattatttcctttccatgtaattttattctcatcttttctcaatgtcatttaatgatgatacttacacgctttgaatcgttcataaattctctaatcc |
38559034 |
T |
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| Q |
250 |
ttatcgtatttcatcccc |
267 |
Q |
| |
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|||||||||||||||||| |
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| T |
38559035 |
ttatcgtatttcatcccc |
38559052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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