View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_43 (Length: 275)
Name: NF15178_high_43
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 4246964 - 4246717
Alignment:
| Q |
16 |
ggttgtgcatcaatgaaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaac |
115 |
Q |
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| T |
4246964 |
ggttgtgcatcaatgaaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaac |
4246865 |
T |
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| Q |
116 |
caaacttctctttataattttgaacttcgtggattgctttcgcaagacaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctt |
215 |
Q |
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| T |
4246864 |
caaacttctctttataattttgaacttcgtggattgctttcgcaagacaaactagcgaataagcacaagcgaggacaaacgatgatatattttgtggctt |
4246765 |
T |
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| Q |
216 |
tgattttcttgtatcgaatgtttcccatgatgataacaccctttgctt |
263 |
Q |
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| T |
4246764 |
tgattctcttgtatcgaatgtttcccatgttgataacaccctttgctt |
4246717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 4251396 - 4251152
Alignment:
| Q |
19 |
tgtgcatcaatgaaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaa |
118 |
Q |
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| T |
4251396 |
tgtgtatcaataaaatacgcccaaacacagtttccaagatagttatttggtattgttggttctaaccttgctctgcaatctacgctgaacacaaaagaaa |
4251297 |
T |
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| Q |
119 |
acttctctttataattttgaacttcgtggattgctttcgcaagacaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctttga |
218 |
Q |
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| T |
4251296 |
acttctctttgtcattatgagccccatgaatcgcttttgcaacacaaacgagcgaataagcacaagtgatgacaaatgatgatagagtttgtggctttga |
4251197 |
T |
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| Q |
219 |
ttttcttgtatcgaatgtttcccatgatgataacaccctttgctt |
263 |
Q |
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| T |
4251196 |
ttctttcgtatcgaatatttcccatgtagataacactctttgctt |
4251152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 4192862 - 4192805
Alignment:
| Q |
31 |
aaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttg |
88 |
Q |
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| T |
4192862 |
aaatgcccccagacacagtttccaaaatagttatttggtattggtggttctaaccttg |
4192805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 4234359 - 4234190
Alignment:
| Q |
46 |
cagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaaacttctctttataattttgaacttcgt |
145 |
Q |
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| T |
4234359 |
cagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttctctttctccttttcaactccat |
4234260 |
T |
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| Q |
146 |
ggattgctttcgcaagacaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctt |
215 |
Q |
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| T |
4234259 |
gaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggctt |
4234190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 4189737 - 4189672
Alignment:
| Q |
36 |
cccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctac |
101 |
Q |
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| T |
4189737 |
cccccaaacacagtttccaaaatagttacttggtattggtggttctaaccttgctctgcaatctac |
4189672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 4189611 - 4189555
Alignment:
| Q |
162 |
acaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctttga |
218 |
Q |
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| T |
4189611 |
acaaacgagtgaataagcacaagtgagaacaaaagatgataaagtttgtggctttga |
4189555 |
T |
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