View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_44 (Length: 272)
Name: NF15178_high_44
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 28897311 - 28897458
Alignment:
| Q |
109 |
atatgatatatctatctatatcgaagcacttttccactaatcctttatcattaaaaatagctggagtacattcaaactcgtatacgcttgatcaaaatta |
208 |
Q |
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| T |
28897311 |
atataatatatctatctatatcgaagcacttttccactaatcctttattattaaaaatagctggagtacattcaaactcgtatacacttgatcaaaatta |
28897410 |
T |
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| Q |
209 |
ccttgctcacataattataaatgcttggggtggaaatcaaggtgttac |
256 |
Q |
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| T |
28897411 |
ccttgctcacataattataaatgcttggggtggaaatcaaggtgttac |
28897458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 28896794 - 28896893
Alignment:
| Q |
7 |
ctgagatgaatctttctcttttgggttcgctcggccaagtgaactattctccttgcatgcgaaaggaacaccataattggttttctccatttttggtggg |
106 |
Q |
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| T |
28896794 |
ctgacatgaatctttctcttttggattcgctcggccgagtgaactattctccttgcatgcgaaaggaacaccataattggttttctccatttttggtggg |
28896893 |
T |
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