View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_5 (Length: 745)
Name: NF15178_high_5
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 16 - 745
Target Start/End: Complemental strand, 41152854 - 41152130
Alignment:
| Q |
16 |
ctttttgtttctaggtaacgcttgtttgcatcagtgattggtgttagcacaggaacacgacctgtcacagctaaaccatatcctttaagaccaacaaatt |
115 |
Q |
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| T |
41152854 |
ctttttgtttctaggtaacgcttgtttgcatcagtgattggtgttagcacaggaacacgacctgtcacagctaaaccatatcctttaagaccaacaaatt |
41152755 |
T |
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| Q |
116 |
ttgctggattgtttgtcatcaacctcatagttcgaactccaatgtccctcaaaatctgcaaatcatataacagcttattttggaatcacattttaaatag |
215 |
Q |
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| T |
41152754 |
ttgctggattgtttgtcatcaacctcatagttcgaactccaatgtccctcaaaatctgcaaatcatataacagcttattt------cacatttttaatag |
41152661 |
T |
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| Q |
216 |
ttttatgaaatatcgcaaattatacaaggatttgattagtattcactaatactatgaagannnnnnnatactatcaaccagcattcaaaaatgttttaca |
315 |
Q |
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| T |
41152660 |
ttttatgaaatatcgcaaattatacaaggatttgattagtattcactaatactatgaagatttttttatactatcaaccagcattcaaaaatgttttaca |
41152561 |
T |
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| Q |
316 |
tatccccaaaatgcataattattgctcaattagtagttgcggcgacatttgatatgctgagaggcgaattgaaatccgcaattctctacttctcaacact |
415 |
Q |
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| T |
41152560 |
tatccccaaagtgcataattattgttcaattggtagttgcggcgacatttgatatgctgagaggcgaattgaaatccgcaattctctacttctcaacact |
41152461 |
T |
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| Q |
416 |
tagtgtttgcgataaacttattatacaatccaagcaagatacgcgaacaaaaattcaagtaaaactttag-nnnnnnnnnnnnnnnnnttccatatgcgg |
514 |
Q |
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| T |
41152460 |
tagtgtttgcgataaacttattatacaatccaagcaagatacgcgaacaaaaattcaagtaaaactttagtttttttttttttttaaattccatatccaa |
41152361 |
T |
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| Q |
515 |
ttattgactaatttgagaaatccaatcatacgtatactttatttgatttgaagcacacaaacaatgtaagtgaaagtgattaaaagatctgacctgggca |
614 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41152360 |
ttactgactaatttgagaaatccaatcatacgtatactttatttgatttgaagcacacaaacaatgtaagtgaaagtgattaaaagatctgacctgggca |
41152261 |
T |
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| Q |
615 |
ccaatgccatactcacgagcatcaacagctaaccctaaatctatgtttgcttggactgtatcacgaccttgatcttgcaagttataggcttgaagtttgt |
714 |
Q |
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| T |
41152260 |
ccaatgccatactcacgagcatcaacagctaaccctaaatctatgtttgcttggactgtatcacgaccttgatcttgcaagttataggcttgaagtttgt |
41152161 |
T |
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| Q |
715 |
gacccaacccaatgcctcttccttcatgacc |
745 |
Q |
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| T |
41152160 |
gacccaacccaatgcctcttccttcatgacc |
41152130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 1852025 - 1851968
Alignment:
| Q |
88 |
aaaccatatcctttaagaccaacaaattttgctggattgtttgtcatcaacctcatag |
145 |
Q |
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| T |
1852025 |
aaaccatagcctttgaggccaacatattttgttggattgtttgtcatcaacttcatag |
1851968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 37266850 - 37266938
Alignment:
| Q |
88 |
aaaccatatcctttaagaccaacaaattttgctggattgtttgtcatcaacctcatagttcgaactccaatgtccctcaaaatctgcaa |
176 |
Q |
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| T |
37266850 |
aaaccataacctttgagcccaacatattttgctggattgtttgtcatcagcttcatagaacgaacacccaagtccctcaatatctgcaa |
37266938 |
T |
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