View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_51 (Length: 250)
Name: NF15178_high_51
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 12838681 - 12838904
Alignment:
| Q |
9 |
gaagaaaatggatgaaatggtgaagagaatgataattgataaacttgaaaccttcattttgttttaattttgacaataagagtgattatgcttctcttaa |
108 |
Q |
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| T |
12838681 |
gaagaaaatggatgaaatggttaagagaatgataattgataaacttgaaatcttcattttgttttaattttaacaataagagtgattatgcttctcttaa |
12838780 |
T |
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| Q |
109 |
ttgattgaagaacacaaatgataagaggatagtagggatggattatataaagactttgttagggcaatgaaataaattaatggtttgaatttgtaccatt |
208 |
Q |
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| T |
12838781 |
ttgattgaagaacacaaatgataagaggatagtagggatggattatataaagactttgttagggcaatgaaataaattaatggtttgaatttgtaccatt |
12838880 |
T |
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| Q |
209 |
ttaggatatatattttgacgcttt |
232 |
Q |
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| T |
12838881 |
ttaggatatatattttgacgcttt |
12838904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 12831854 - 12832080
Alignment:
| Q |
9 |
gaagaaaatggatgaaatggtgaagagaatgataattgataaacttgaaaccttcattttgttttaattttgacaataagagtgattatgcttctcttaa |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12831854 |
gaagaaaatggatgaaatggttaagagaatgataattgaaaaacttgaaatcttcattttgttttaattttaacaataagagtgattatgcttctcttaa |
12831953 |
T |
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| Q |
109 |
ttgattgaagaacacaaatgataagaggatagtagggatggattat---ataaagactttgttagggcaatgaaataaattaatggtttgaatttgtacc |
205 |
Q |
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| T |
12831954 |
ttgattgaagaacacaaatgataagaggatagtagggatggattatataataaagactttgttagggcaatgaaataaattaatggtttgaatttgtacc |
12832053 |
T |
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| Q |
206 |
attttaggatatatattttgacgcttt |
232 |
Q |
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| T |
12832054 |
attttaggatatatattttgacgcttt |
12832080 |
T |
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Back To:
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