View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_56 (Length: 242)
Name: NF15178_high_56
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 3542986 - 3543201
Alignment:
| Q |
9 |
agcagagatagcaaattattatcttcaaaactatccagaattcaatttgaaagagaagtaagttcttactatactttctacatcaacttatacaacatat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542986 |
agcagagatagcaaattattatcttcaaaactatccagaattcaatttgaaagagaagtaagttcttactatactttctacatcaacttatacaacatat |
3543085 |
T |
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| Q |
109 |
agcatcgatttgttttgaaaataaatttcctacaaagtgaaatctcttatatctatggagcttgaaatcttgatcgtcaaattacatattggacaacgtc |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3543086 |
agtatcgatttgttttgaaaataaatttcctacaaagtgaaatctcttatatctatcgagcttgaaatcttgatcgtcaaattacatattggacaatgtc |
3543185 |
T |
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| Q |
209 |
aaccaggggcggattt |
224 |
Q |
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|| |||||||||||| |
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| T |
3543186 |
aagtaggggcggattt |
3543201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 3530461 - 3530524
Alignment:
| Q |
9 |
agcagagatagcaaattattatcttcaaaactatccagaattcaatttgaaagagaagtaagtt |
72 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |
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| T |
3530461 |
agcagagatagcaaattattattctcaaaactatccagagttcaatttgaaggagaagtaagtt |
3530524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 3550771 - 3550832
Alignment:
| Q |
11 |
cagagatagcaaattattatcttcaaaactatccagaattcaatttgaaagagaagtaagtt |
72 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
3550771 |
cagagataggaaattattattctcaaaactatccagaattcaaattgaaggagaagtaagtt |
3550832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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