View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_high_59 (Length: 237)
Name: NF15178_high_59
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_59 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 34223332 - 34223551
Alignment:
| Q |
18 |
gaaacttcatcgctacgcttcttctcattcgttttttctggtggcaaattagcggtggcggtgacggtagaaacttgattcttagactgtttcttacctg |
117 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223332 |
gaaacttcatcactactcttcttctcattcgttttttctggtggcaaattagcggtggcggtgacggtagaaacttgattcttagactgtttcttacctg |
34223431 |
T |
|
| Q |
118 |
aaaatgagtacaaaaaaggaataatcaaataaaattttctgagaaagcataataattaacgaaaatgtgaaacgaaacgaaccgaaggtgaggaaacggc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223432 |
aaaatgagtacaaaaaaggaataatcaaataaaattttctgagaaagcataataattaacgaaaatgtgaaacgaaacgaaccgaaggtgaggaaacggc |
34223531 |
T |
|
| Q |
218 |
ggtggcgacgggaattagaa |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34223532 |
ggtggcgacgggaattagaa |
34223551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University