View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_high_60 (Length: 236)
Name: NF15178_high_60
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_60 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 11380108 - 11379890
Alignment:
| Q |
3 |
aaatcttatcacacttataggagtaaaccaagaatcaaaaactcttatctacgagtatttaccaaatggaagccttgaagatcatctcagccgcaatgga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11380108 |
aaatcttatcacacttataggagtaaaccaagaatcaaaaactcttatctacgagtatttaccaaatggaagccttgaagatcatctcagccgcaatgga |
11380009 |
T |
|
| Q |
103 |
aataataatgcacctccattaacatggcagactcgaattcgcattgcgacagaactatgttctgctctcatatttctccattccaataaacctcacagca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11380008 |
aataataatgcacctccattaacatggcagactcgaattcgcatcgccacagaactatgttctgctctcatatttctccattccaataaacctcacagca |
11379909 |
T |
|
| Q |
203 |
tagtccatggtgacttaaa |
221 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11379908 |
tagtccatggtgacttaaa |
11379890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 29362717 - 29362815
Alignment:
| Q |
117 |
tccattaacatggcagactcgaattcgcattgcgacagaactatgttctgctctcatatttctccattccaataaacctcacagcatagtccatggtga |
215 |
Q |
| |
|
||||||| ||||||| || || ||||| || || ||||||| || || |||||||| ||||| ||||| | |||||||||||||||||| |||||||| |
|
|
| T |
29362717 |
tccattatcatggcaaacacggattcgaatcgctgcagaactctgctccgctctcatctttcttcattcaagtaaacctcacagcatagtgcatggtga |
29362815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University