View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_high_65 (Length: 229)
Name: NF15178_high_65
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33220805 - 33220581
Alignment:
| Q |
1 |
cttcaattgatatgcattgacaatataaaataaataattttacacatacattaaatcatatattttactacannnnnnnnnatgaaatatatcttactac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33220805 |
cttcaattgatatgcattgacaatataaaataaataattttacacatacattaaatcatatattttactacatttttttttatgaaatatatcttactac |
33220706 |
T |
|
| Q |
101 |
atagataatcatagacgaccctctcaaaaagaaatagacaaagtttacgaactaatctaataaagtagcataatagtaaatagattttatttttccttca |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33220705 |
atagataattatagacgaccctctcaaaaagaaatagacatagtttaggaactaatctaataaagtagcataatagtaaatagattttatttttccttca |
33220606 |
T |
|
| Q |
201 |
aaagaaaaagtaatattcttggaca |
225 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
33220605 |
aaagaaaaagtaatattcatggaca |
33220581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University