View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15178_high_9 (Length: 511)

Name: NF15178_high_9
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15178_high_9
NF15178_high_9
[»] chr8 (3 HSPs)
chr8 (38-501)||(9408132-9408593)
chr8 (246-283)||(29410787-29410824)
chr8 (247-283)||(13358005-13358041)
[»] chr1 (1 HSPs)
chr1 (244-284)||(30927776-30927816)
[»] chr3 (3 HSPs)
chr3 (266-300)||(31138128-31138162)
chr3 (250-324)||(41223047-41223121)
chr3 (230-279)||(37319943-37319992)
[»] chr2 (2 HSPs)
chr2 (247-321)||(34346298-34346372)
chr2 (236-284)||(20612583-20612631)
[»] scaffold0024 (1 HSPs)
scaffold0024 (247-279)||(149409-149441)
[»] chr7 (1 HSPs)
chr7 (248-284)||(39230524-39230560)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 38 - 501
Target Start/End: Complemental strand, 9408593 - 9408132
Alignment:
Q  38 cattaaatttcatgagggggttataagtacaaaagagataatagaaaagnnnnnnnnncattaaatttcacgaggggattataagtacaatggaaaaaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  9408593 cattaaatttcatgagggggttataagtacaaaagagataatagaaaagaaaaaaaaacattaaatttcacgaggggattataagtacaatggaaaaaac 9408494  T
Q  138 acgttttctattttgtaaagtaattcttaattaaccaagttgtatgagctccagtagtaaaaggaactcctttcaaagatgtagcgaatgcagaatttga 237  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||   |||||  ||||  |||| | ||||||||| | || |||||    
T  9408493 acgttttctattttgtaaagtaattcttaattaaccaagttgcttgagctccggtag--caaggagttcctaccaaaaacgtagcgaataccgagtttga 9408396  T
Q  238 ttctcaagagggaacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaatcgatccnnnnnnnnn 337  Q
    |||||| |||||||||| | ||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||             
T  9408395 ttctcaggagggaacaatgtttggccaatgcgcatgcctctatgcatgagtcatattaatcgtttacatttaatgggtcggaaatcgatccaaaaacaaa 9408296  T
Q  338 nnnnntaaagtaattcttaatttacctttttcatataaactttatcacctttcttgattcatgtaaaatttgttaaagtgatgtatattttaagacgaat 437  Q
         |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||     
T  9408295 aaaaataaagtaattcttaatttacctttttcatataaactttatcatctttctcgattcatgtaaaatttgttaaagtgatgtatattttaagatgaag 9408196  T
Q  438 gaaataannnnnnnnatgaactaaaaacgtggttaagcatcaaagtgaaatgtcgtgacctatg 501  Q
    |||||||        ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9408195 gaaataattttttttatgaactaaaaacgtggttaagcatcaaagtgaaatgccgtgacctatg 9408132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 29410824 - 29410787
Alignment:
Q  246 agggaacaacgcttgaccaatgtgcatgcctctatgca 283  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29410824 agggaacaacgcttgaccaatgtgcatgcctctatgca 29410787  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 13358041 - 13358005
Alignment:
Q  247 gggaacaacgcttgaccaatgtgcatgcctctatgca 283  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  13358041 gggaacaacgtttggccaatgtgcatgcctctatgca 13358005  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 30927816 - 30927776
Alignment:
Q  244 agagggaacaacgcttgaccaatgtgcatgcctctatgcat 284  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  30927816 agagggaacaacgcttggccaatgtgcatgcctctacgcat 30927776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 31138162 - 31138128
Alignment:
Q  266 tgtgcatgcctctatgcataagtcatattaatcgt 300  Q
    ||||||||||||||||||||||||| |||||||||    
T  31138162 tgtgcatgcctctatgcataagtcagattaatcgt 31138128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 41223121 - 41223047
Alignment:
Q  250 aacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaatcg 324  Q
    ||||||| ||| |||||| ||||||||||| |||||||||  ||||||||  ||  |||||||| ||||||||||    
T  41223121 aacaacgtttggccaatgcgcatgcctctacgcataagtctgattaatcgcctatctttaatggatcggaaatcg 41223047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 37319992 - 37319943
Alignment:
Q  230 gaatttgattctcaagagggaacaacgcttgaccaatgtgcatgcctcta 279  Q
    |||||||||||||| || | ||||||||||||| | ||||||||||||||    
T  37319992 gaatttgattctcaggatgaaacaacgcttgacaagtgtgcatgcctcta 37319943  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 34346372 - 34346298
Alignment:
Q  247 gggaacaacgcttgaccaatgtgcatgcctctatgcataagtcatattaatcgtttacatttaatgggtcggaaa 321  Q
    ||||||||| |||| ||| |||||||||||||| |||| ||||| |||||||| | || |||  |||||||||||    
T  34346372 gggaacaacacttggccagtgtgcatgcctctacgcatgagtcagattaatcgctcacctttggtgggtcggaaa 34346298  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 20612631 - 20612583
Alignment:
Q  236 gattctcaagagggaacaacgcttgaccaatgtgcatgcctctatgcat 284  Q
    |||||||| ||||||||||| |||| ||| || ||||||||||||||||    
T  20612631 gattctcaggagggaacaacacttggccagtgcgcatgcctctatgcat 20612583  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 149409 - 149441
Alignment:
Q  247 gggaacaacgcttgaccaatgtgcatgcctcta 279  Q
    |||||||||||||||||| ||||||||||||||    
T  149409 gggaacaacgcttgaccagtgtgcatgcctcta 149441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 39230524 - 39230560
Alignment:
Q  248 ggaacaacgcttgaccaatgtgcatgcctctatgcat 284  Q
    |||||||| |||||| |||||||||||||||||||||    
T  39230524 ggaacaacacttgactaatgtgcatgcctctatgcat 39230560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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