View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_low_1 (Length: 1401)
Name: NF15178_low_1
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 1279; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1279; E-Value: 0
Query Start/End: Original strand, 12 - 1386
Target Start/End: Original strand, 40627745 - 40629118
Alignment:
| Q |
12 |
catcatcatcaaatccaacaacatcggattccttagcaacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacgatgaggactctattga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40627745 |
catcatcatcaaatccaacaacatcggattccttagcaacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacgatgaggactctattga |
40627844 |
T |
|
| Q |
112 |
cttgcccaaaccatatgcccttcttcttcttgaggcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40627845 |
cttgcccaaaccatatgcccttcttcttctggaagcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttg |
40627944 |
T |
|
| Q |
212 |
aaggtgtaaacgagaatcgacctatgcttcaatttggtatcatagtcgcgaatgacagacgcaatttcatcggcaataccttgcatctggtccacccaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40627945 |
aaggtgtaaacgagaatcgacctatgcttcaatttggtatcatagtcgcgaatgacagatgcaatttcatcggcaataccttgcatttggtccacccaga |
40628044 |
T |
|
| Q |
312 |
ttctagatcttctatctatttcactcctgtctcgtatatcttgatgcagcgcatccatcaattccatttcccttctgattgattggacttcctgtttgag |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40628045 |
ttctagatcttctatctatttcactcctgtctcgtatatcttgatgcagtgcatccatcaattccatttcccttctgattgattggacttcctgtttgag |
40628144 |
T |
|
| Q |
412 |
ccctgtgacaggtcgatatgaggaggacgaggtagctggttctggatgttcctcagaacgtacaagctcttgttgtgttgctccttgaataatatttgca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40628145 |
ccctgtgacaggtcgatatgaggaggacgaggcagctggttctggatgttcctcagaacgtacaagctcttgttgtgttgctccttgaataatatttgca |
40628244 |
T |
|
| Q |
512 |
atgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccagcaaccaccat |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40628245 |
atgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccaacaaccaccat |
40628344 |
T |
|
| Q |
612 |
taccagcagcatcaacaagggagcgaccattttgagccacgactctcagttgatcaacccatactctcttgtctatcattcatgctttctgcactttcag |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40628345 |
taccagcagcatcaacaagggagcgaccattttgagccacaactctcagttggtcaacccatactctc-tgtctatcattcatgctttctgcactttcag |
40628443 |
T |
|
| Q |
712 |
cagtgtccctaagaaacacgtgcattagatctaaatctctttgcacacagttcaaattattatccacggacctgcacaacttcacaatccagacaataac |
811 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40628444 |
cagtgtccctaagaaacacgtgcattagatctaaatctctttgcaaacactgcaaattattatccatggacctgcacaacttcacaatccagacaataac |
40628543 |
T |
|
| Q |
812 |
ttgatacagcggggaactcaattggaataggagtgctatctggtacgggataaaaaataacaagatgaaaatcactaaaagaattaaagtgtaagtgaag |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40628544 |
ttgatacagcggggaactcaattggaataggagtgctatctggtacgggataaaaaataacaagatgaaaatcactaaaagaattaaagagtaagtgaag |
40628643 |
T |
|
| Q |
912 |
aagctcgaggtcagcagccttaatattgctccnnnnnnnngattcagtttacgtgctcttactggtcctcgtattgaaacaattccgaaagcttgagata |
1011 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40628644 |
aagctcgaggtcagcagccttaatattgctccttttttttgattcagtttacgtgctcttactggtcctcgtattgaaacaattccgaaagcttgagata |
40628743 |
T |
|
| Q |
1012 |
ttactacaattaagatgacccctgccaagccaacacttttactactaatatgactcagaagaaacaattcagcagtataagcaatagagaaagggatgag |
1111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40628744 |
ttactacaattaagatgacccctgccaagccaacacttttactactaatatgactcagaagaaacaattcagcagtataagcaatagagaaagggatgag |
40628843 |
T |
|
| Q |
1112 |
ttctgatattatcaaaatctccattgacaagtcttgaacgggtgttgatctttttgttctttcattcatgtctcccactcccacaacttcataagtcaaa |
1211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40628844 |
ttctgatattatcaaaatctccattgacaagtcttgaacgggtgttgatctttttgttctttcattcatgtctcccactcccacaacttcataagtcaaa |
40628943 |
T |
|
| Q |
1212 |
cttctgccaagtgcatctccaatttgaatactaacatgcttcatctgcttcttaaattcccatgaggaagtatcgtgataaaggaccttcctcataagac |
1311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40628944 |
cttctgccaagtgcatctccaatttgaatactaacatgcttcatctgcttcttaaattcccatgaggaagtatcgtgataaaggaccttcctcataagac |
40629043 |
T |
|
| Q |
1312 |
taagacgacgactactcatttggaaccatttttctcttcttgcaatgaaatttccagcaacttctgccatgtaat |
1386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
40629044 |
taagacgacgactactcatttggaaccatttttctcttcttgcaatgaaatcttcagcaacttctgccatgtaat |
40629118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 5e-75
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 40637532 - 40637111
Alignment:
| Q |
17 |
tcatcaaatccaacaacatcggattccttagcaacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacga---tgaggactctattgact |
113 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||||||||| | |||||||| ||||| ||||| ||||| || ||| ||||| |||| || |
|
|
| T |
40637532 |
tcatcaaatccaacgacatttgattctttagcaacgagagacaattgcgccgttccgcgaagtatatgaactgtggaggacattgacgactcaattgtct |
40637433 |
T |
|
| Q |
114 |
tgcccaaaccatatgcccttcttcttcttgaggcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
40637432 |
tgcccaaaccatatgcccttcttcttctggaggcatcttcaattttgtttctgatagcattgatctcttcgctaataacatgtcgggtccaaaacttgag |
40637333 |
T |
|
| Q |
214 |
ggtgtaaacgagaatcgacctatgcttcaatttggtatcatagtcgcgaatgacagacgcaatttcatcggcaataccttgcatctggtccacccagatt |
313 |
Q |
| |
|
||||| | ||||| ||| ||| ||||||||| | |||||| |||||||||| ||||||||| | ||||||| ||||| || |||||||| ||| |
|
|
| T |
40637332 |
agtgtataacagaattgacttatacttcaatttagcatcataacgttgaatgacagattcaatttcattgacaataccatgcatttgctccacccaaatt |
40637233 |
T |
|
| Q |
314 |
ctagatcttctatctatttcactcctgtctcgtatatcttgatgcagcgcatccatcaattccatttcccttctgattgattggacttcctgtttgagcc |
413 |
Q |
| |
|
||||||||||||| | || ||| | ||| ||| ||||||| ||| ||| |||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
40637232 |
gtagatcttctatccaggtctctcatttctagtacatcttgaaacagtgcaaacatcaattcctcttcctctctgattgattggacttcctgtttgagcc |
40637133 |
T |
|
| Q |
414 |
ctgtgacaggtcgatatgagga |
435 |
Q |
| |
|
| ||||||||||| || ||||| |
|
|
| T |
40637132 |
ccgtgacaggtcggtacgagga |
40637111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 8e-43
Query Start/End: Original strand, 524 - 811
Target Start/End: Complemental strand, 40636902 - 40636610
Alignment:
| Q |
524 |
gtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccagcaaccaccattaccagcagcat |
623 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||| ||||||||||| | |||| || || |||| ||||| |||||||| ||| ||||||||| |
|
|
| T |
40636902 |
gtcttcctgtgtgagagattaagaatctcatccaagaagcaattgatgtccttcggaaacataattcttctcctccaacaaccacccttagcagcagcat |
40636803 |
T |
|
| Q |
624 |
caacaagggagcgaccattttgagccacgactctcagttgatcaacccatactctcttgtctatcattcat---gctttctgcactttcagcag---tgt |
717 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||||||| |||||||||||| || ||||| |||||||| | || | |||| ||||||| | | |
|
|
| T |
40636802 |
caagaagggacttgccattttgagccacgattctcagttgttcaacccatactttc-tgtctttcattcattgggacttgttcactctcagcagcaatat |
40636704 |
T |
|
| Q |
718 |
ccctaagaaacacgtgcattagatctaaatctctttgcacacagttcaaattattatccacggacctgcacaacttcacaatccagacaataac |
811 |
Q |
| |
|
|||||||||| | ||||||| | ||||||||||||| || ||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
40636703 |
ccctaagaaatgcatgcattaaagctaaatctctttgggtgcacttcaaattattgtccatagacctccacaacttcacaatccagacaataac |
40636610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 357 - 443
Target Start/End: Complemental strand, 40658014 - 40657928
Alignment:
| Q |
357 |
gcagcgcatccatcaattccatttcccttctgattgattggacttcctgtttgagccctgtgacaggtcgatatgaggaggacgagg |
443 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
40658014 |
gcagcgcatccatcaattccttttcccttctgattgattggactttctctttgagccccatgacaggccgatacgaggaggaggagg |
40657928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 505 - 586
Target Start/End: Complemental strand, 40657809 - 40657728
Alignment:
| Q |
505 |
atttgcaatgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaactta |
586 |
Q |
| |
|
||||||||||| |||| | | |||||| | ||| |||| ||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
40657809 |
atttgcaatgcaataaatggccttcctatctgatatatcaagaatctctttcaacaaacagttgatatccttggcaaactta |
40657728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1335 - 1374
Target Start/End: Complemental strand, 40636065 - 40636026
Alignment:
| Q |
1335 |
aaccatttttctcttcttgcaatgaaatttccagcaactt |
1374 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
40636065 |
aaccatttttctcttgttgaaatgaaatttccagcaactt |
40636026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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