View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_10 (Length: 547)
Name: NF15178_low_10
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 38483908 - 38484427
Alignment:
| Q |
18 |
ggaggaacgcgatttgcaggttctgcttttaactgttgtttttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggagg |
117 |
Q |
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| T |
38483908 |
ggaggaacgcgatttgcaggttctgcttttaacggttgtttttacatggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggagg |
38484007 |
T |
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| Q |
118 |
ttggtttcaagggagacgaagttgcttggagttaggatggtgctgaaaagtatcgttgctgcagggtgggtcgttgttttttcttacttttatacgaaga |
217 |
Q |
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| T |
38484008 |
ttggtttcaagggagacgaagttgcttggagttaggatggtgctgaaaagtatcgttgctgcagggtgggtcgttgttttttcttacttttatacgaaga |
38484107 |
T |
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| Q |
218 |
catggaagcagagaaaccacgacaaagaatggtctgttgaagctaataagaggttgataatttttcttaaagtttgttttctttttgttattccggagct |
317 |
Q |
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| T |
38484108 |
catggaagcagagaaaccacgacaaagaatggtctgttgaagctaataagaggttgatagtttttcttaaagtttgttttctttttgttattccggagct |
38484207 |
T |
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| Q |
318 |
tattgctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggtttcagaggaga |
417 |
Q |
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| T |
38484208 |
tattgctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggtttcagaggaga |
38484307 |
T |
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| Q |
418 |
atttatgttggtcgtggattgagacaaggtcttgtagatagtgttaagtatactttgttttgggttgtggtgttggtttcaaaatttagtttcagttact |
517 |
Q |
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| T |
38484308 |
atttacgttggtcgtggattgagacaaggtcttgtagatagtgttaaatatactttgttttgggttgtggtgttggtttcaaaatttagtttcagttact |
38484407 |
T |
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| Q |
518 |
ttttacagattaaacctatg |
537 |
Q |
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| T |
38484408 |
ttttacagattaaacctatg |
38484427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 30118347 - 30118468
Alignment:
| Q |
58 |
tttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagttaggatgg |
157 |
Q |
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| T |
30118347 |
tttacatggagtggtatgaggtttttgcagtctttgcttgatgtgggcatgcagtataggttggtatcgagggagacaaagatgcttggagtgaggatgt |
30118446 |
T |
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| Q |
158 |
tgctgaaaagtatcgttgctgc |
179 |
Q |
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| T |
30118447 |
ttctgaaatgtattgttgctgc |
30118468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 446
Target Start/End: Original strand, 30118596 - 30118735
Alignment:
| Q |
307 |
attccggagcttattgctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggt |
406 |
Q |
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| T |
30118596 |
attccggaggttctggctttagccctgtttatacttccttggattagaaactttgtggagaatacaaactggaggatcttttacatgctgtcgtggtggt |
30118695 |
T |
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| Q |
407 |
ttcagaggagaatttatgttggtcgtggattgagacaagg |
446 |
Q |
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| T |
30118696 |
ttcagagcagaagctttgttggtcggggtttgagagaagg |
30118735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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