View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_11 (Length: 514)
Name: NF15178_low_11
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 194 - 498
Target Start/End: Complemental strand, 2265845 - 2265541
Alignment:
| Q |
194 |
tgcgaacacatttaacataaaaacatacacgttgaactcgtgtagttctcaatatgnnnnnnnnnnctaaaaggataaaacatagagatgtgaaaaacat |
293 |
Q |
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| T |
2265845 |
tgcgaacacatttaacataaaaacatacacgttgaactcgtgtagttctcaatatgaaaaaaaaaactaaaaggataaaacatagagatgtgaaaaacat |
2265746 |
T |
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| Q |
294 |
acaagaatagctaaaatctagagtgttttaaacttcattttcaaagtgccatcatatttacgttttaaccgaatattttgataactagttcaaaagaggt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2265745 |
acaagaatagctaaaatctagagtgttttaaacttcattttcaaagtgccatcatatttacgttttaaccgaatattttgataactagtttaaaagaggt |
2265646 |
T |
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| Q |
394 |
ttattttatccatcgagcggggatggatccatggatactcattaacatctctaattgtattcgtacaacttgagaacaattgacatgcaatttcaagttt |
493 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2265645 |
ttattttatccatcgggcggggatggatccatggatactcattaacatctctaattgtattcgtacaatttgagaacaattgacatgcaatttcaagttt |
2265546 |
T |
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| Q |
494 |
gttaa |
498 |
Q |
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||||| |
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| T |
2265545 |
gttaa |
2265541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 2265936 - 2265833
Alignment:
| Q |
75 |
gtagaagtattata--catttaaacatgtgagcacataaacatcaacaacaaaaacgtacatgcataaatcagtaattatattaattaatatgcgaacac |
172 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2265936 |
gtagaagtattatatacatttaaacatgtgagcacataaacatcaacaacaaaaacgtacatgcataaatcagtaattatattaattaatatgcgaacac |
2265837 |
T |
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| Q |
173 |
attt |
176 |
Q |
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|||| |
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| T |
2265836 |
attt |
2265833 |
T |
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