View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_13 (Length: 495)
Name: NF15178_low_13
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 40174660 - 40174192
Alignment:
| Q |
18 |
atttccgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccatattgagggaactccaaaactgatgaacgag |
117 |
Q |
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| T |
40174660 |
atttccgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccatattgagggaactccaaaactgatgaacgag |
40174561 |
T |
|
| Q |
118 |
atgcacaaaaatgcttagaactaaggattgtgattgaagactg----ct--ttttagtcactcaattttactacactcgtaaacaagagaacaagagccg |
211 |
Q |
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| T |
40174560 |
atgcacaaaaatgcttagaactaaggattgtgattgtagagtgtagactgcttttagtcacccaattttactacactcgtaaacaagagagaaagagccg |
40174461 |
T |
|
| Q |
212 |
ggtattctcaccttatgctgactgtatttctctctgatagcagtaatggaaggtgaactatgatagccattgtggtacaacaaatgcaatccctcaacac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40174460 |
ggtattctcaccttatgctgactgtatttctctctgatagcagtaatggaaggtgaactatgatagccatttcggtacaacaaatgcaatccctcaacac |
40174361 |
T |
|
| Q |
312 |
attcctgcaattctgatgcttggtaacctgtgtaatgccttagcatagagttctatacaaaagcatatgcatagttgcacaacatcagtatatatgccta |
411 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40174360 |
attcccgcaattctgatgcttggtaacctgtgtaatgccttagcatagagttctataccaaagcatatgcatagttgcacaacatcagtatatatgccta |
40174261 |
T |
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| Q |
412 |
tcaaaagatattcagcaaaataggtttcctgcaatacatacccagggattctttgtcgaaagtagtata |
480 |
Q |
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| T |
40174260 |
tcaaaagatattcagcaaaataggtttcctgcaatacatacccagggattctttgtcgaaagtagtata |
40174192 |
T |
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