View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_14 (Length: 495)
Name: NF15178_low_14
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Original strand, 12559558 - 12560021
Alignment:
| Q |
15 |
catagggagatatgtgaaaattccaaggcaatgaatacaataatatttactaataacattgatcaacagtcatggaacaagtgatgccagacaaccaaaa |
114 |
Q |
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| T |
12559558 |
catagggtgatatgtgaaaattccaaggcaatgaatacaataatatttacaaataacattgatcaatagtcaagaaacaaatgatgccagacaaccaaaa |
12559657 |
T |
|
| Q |
115 |
cacaagacacagaccaatattactgggtcaaacatgtgcttttatctcaaaattacaacattgatatgaaagatgcataatatattaaaatgtgatctca |
214 |
Q |
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| T |
12559658 |
cacaagacacagaccaatattactgggtcaaacatgtgcttttatctcaaaattacaacattgatatgaaagatgcataatatattaaaatgtgatctca |
12559757 |
T |
|
| Q |
215 |
tagttaatttaatgaagattgaaaaaccatacatatgaagacatgttctaaagaaacagattagaagaagaatgaggatatcaaggagcagaaggtttct |
314 |
Q |
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| T |
12559758 |
tagttaatttaatgaagattgaaaaaccatacatatgaagacatgttctaaagaaacatattagaagaagaatgaggatatcaaggagcagaaggtttct |
12559857 |
T |
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| Q |
315 |
ttggttttcgtaagagcttttgagagagacatgaaggcttttctacacataactagtcattgttaaggtcaagttgattttacccaaaacttccaacaat |
414 |
Q |
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| T |
12559858 |
ttggttttcgtaagagcttttgagagagacatgaaggcttttctacacataactagtcattgttaaggtcaagttcattttacccaaaacttccaacaat |
12559957 |
T |
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| Q |
415 |
tatatccacattccacaagtgccacatgcttagcttggatcataaatggaggtagcaaatagtg |
478 |
Q |
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| T |
12559958 |
gatatccacattccacaagtgccacatgcttagcttggatcataaatggaggtagcaaatagtg |
12560021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 201 - 442
Target Start/End: Original strand, 12556454 - 12556701
Alignment:
| Q |
201 |
aaaatgtgatctcatagttaatttaatgaagattgaaaaaccatacatatgaagacatgttctaaagaaacagattagaagaagaatgaggatatcaagg |
300 |
Q |
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||||||||||| || || ||||||||| ||||||||||||||||||||||||| || ||||| || ||||||| | |||||| ||||| |||||||||| |
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| T |
12556454 |
aaaatgtgatcacaaagctaatttaataaagattgaaaaaccatacatatgaatacttgttcagaaaaaacagaattgaagaaaaatgatgatatcaagg |
12556553 |
T |
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| Q |
301 |
agcag------aaggtttctttggttttcgtaagagcttttgagagagacatgaaggcttttct-acacataactagtcattgttaaggtcaagttgatt |
393 |
Q |
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| T |
12556554 |
agaaggagcaaaaggtttctttggtttctgtaagag-ttttgagagagacatgaatgctttttttacacaaaattagtcattgtcaagatcaagttgatt |
12556652 |
T |
|
| Q |
394 |
ttacccaaaacttccaacaattatatccacattccacaagtgccacatg |
442 |
Q |
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| T |
12556653 |
ttacccaaaacttccaacaattatatcagcaatccacaagtaccacatg |
12556701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 111 - 313
Target Start/End: Complemental strand, 9291955 - 9291753
Alignment:
| Q |
111 |
aaaacacaagacacagaccaatattactgggtcaaacatgtgcttttatctcaaaattacaacattgatatgaaagatgcataatatattaaaatgtgat |
210 |
Q |
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| T |
9291955 |
aaaactcaagatacaaaccaaaattactggttcaaacgtgtccctctgtctcaaaattacaactttgatatgaaatatttataagatattaatatttaat |
9291856 |
T |
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| Q |
211 |
ctcatagttaatttaatgaagattgaaaaaccatacatatgaagacatgttctaaagaaacagattagaagaagaatgaggatatcaaggagcagaaggt |
310 |
Q |
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| T |
9291855 |
ctcaaaaatgatttaataatgattgaaaaatcataaatatgaagacctgttctaaaaaaacagaacagaagaaaaatgaggatatcaaggagcaaagggt |
9291756 |
T |
|
| Q |
311 |
ttc |
313 |
Q |
| |
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||| |
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| T |
9291755 |
ttc |
9291753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 478
Target Start/End: Original strand, 12556749 - 12556778
Alignment:
| Q |
449 |
ttggatcataaatggaggtagcaaatagtg |
478 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12556749 |
ttggatcataaatggaggtagcaaatagtg |
12556778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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