View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_16 (Length: 484)
Name: NF15178_low_16
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 25828685 - 25828219
Alignment:
| Q |
1 |
ttcaagggagtgtttgatggagcatagggccaagtatttttatttccattcttgatgaacctt--ggcttgttactggtgaccacattgatggtaatatg |
98 |
Q |
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|||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||| |
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| T |
25828685 |
ttcaagggggtgtttgatggtgcataggaccaagtacttttatttccattcttgatgaaccttttggcttgtaa-tggtgaccgtattgatggtaatatg |
25828587 |
T |
|
| Q |
99 |
ccaaacacataccatcttcgtaatttttgtgttgctagtccgatagttcctgcgcataaggtatggaaccatgatttgattaatcaagtttttagcccgg |
198 |
Q |
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||||||| ||||||| || ||||||||| ||||||||||| ||| |||||| ||| |||||||||||||||||||||||| |||| |||||||||||| |
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| T |
25828586 |
ccaaacatataccatgtttgtaatttttctgttgctagtctgatggttcctacgcgaaaggtatggaaccatgatttgattcatcatgtttttagcccga |
25828487 |
T |
|
| Q |
199 |
atattgcttctagtattttgcgatatatttgattaggtgtcagatgacaaattgatttgaaaagctgaaaaggatggtgaatattatgtaaaaagtgtat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
25828486 |
atattgcttctagtattttgcgatatatttgattaggtgtcagatgataaattgatttggaaagctgaaaaggatggcgagtattatgtaaaaagtgtat |
25828387 |
T |
|
| Q |
299 |
ataggctttgtatggaatgtttggtggatacatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggttctcccgaaaatcaaacac |
398 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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| T |
25828386 |
ataggctttgtatggaaggtttggtggatacatcgcatctttgaagaccaggtttctgagccggatatggcggttagaggttctcctgaaaatcaaacac |
25828287 |
T |
|
| Q |
399 |
ttagtttggagaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaatg |
466 |
Q |
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| T |
25828286 |
ttagtctgaagaatgtgtcgaggttgtttgcctacacgagttcgtttacaggataaaggtgtccaatg |
25828219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 25669885 - 25669749
Alignment:
| Q |
328 |
acatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgttt |
427 |
Q |
| |
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||||| |||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||| |||||| |
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| T |
25669885 |
acatcacatcattgaaggtcaggtttatgagccggatttggcggttaaaagttctcccgaaaatcaaacacttagttcggggaatgtgtcgagatcgttt |
25669786 |
T |
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| Q |
428 |
gcctacacgagttcgtttataggataaaggtgtccaa |
464 |
Q |
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| T |
25669785 |
gcctacacgagttcgtttacaggataaaggtgtccaa |
25669749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 206 - 391
Target Start/End: Original strand, 24888224 - 24888411
Alignment:
| Q |
206 |
ttctagtattttgcgatatatttgattaggtgtcagatgacaaattgatttgaaaagctgaaaaggatggtgaatat--tatgtaaaaa------gtgta |
297 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||| | ||| ||| |||||||||| |||| |
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| T |
24888224 |
ttctagtattttgcgatatgtttgatt------cagatgacaaattgatttggaaagcagaaaaggacgatgagtatgatatgtaaaaataaaaagtgtc |
24888317 |
T |
|
| Q |
298 |
tataggctttgtatggaatgtttggtggatacatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggttctcccgaaaat |
391 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||| || |||||| ||||||||||||| |||||||||| |
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| T |
24888318 |
tataggctttgtatggaaggttcggtggatacatcgcattttcaaagaccaggtttctgggctggatttagcggttaaaggttttcccgaaaat |
24888411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 380
Target Start/End: Complemental strand, 25430612 - 25430519
Alignment:
| Q |
287 |
taaaaagtgtatataggctttgtatggaatgtttggtggatacatcgcatctttgaagaccaggtttctgagccggatttggcggttaaaggtt |
380 |
Q |
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|||||||||||||| |||||||||||||| ||| |||||||||||||||| | ||| || |||||||| || |||||||||||||||||||| |
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| T |
25430612 |
taaaaagtgtatatgggctttgtatggaaggttcggtggatacatcgcatttccgaaaactaggtttctaggctggatttggcggttaaaggtt |
25430519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 25472515 - 25472442
Alignment:
| Q |
393 |
aaacacttagtttggagaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaatg |
466 |
Q |
| |
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||||||||||| || ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
25472515 |
aaacacttagtctgaagaatgtgtcttggttgtttgcctacacgagttcgtttacaggataaaggtgtctaatg |
25472442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 25429807 - 25429750
Alignment:
| Q |
409 |
gaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaatg |
466 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
25429807 |
gaatgtgctgaggttgtttgcctacaaaagttcgtttagaggataaaggtgtccaatg |
25429750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 24889105 - 24889161
Alignment:
| Q |
409 |
gaatgtgttgaggtcgtttgcctacacgagttcgtttataggataaaggtgtccaat |
465 |
Q |
| |
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|||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
24889105 |
gaatgtgtcgaggttgtttgcctacaaaagttcgtttagaggataaaggtgtccaat |
24889161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 25430656 - 25430617
Alignment:
| Q |
215 |
tttgcgatatatttgattaggtgtcagatgacaaattgat |
254 |
Q |
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| T |
25430656 |
tttgcgatatgtttgattaggtgtcagatgacaaattgat |
25430617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 14230003 - 14230099
Alignment:
| Q |
236 |
tgtcagatgacaaattgatttgaaaagctgaaaaggatggtgaatattatgtaaaaagtgtatataggctttgtatggaatgtttggtggatacatc |
332 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||| |||| |||||| ||| || ||||| |||||||||| |
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| T |
14230003 |
tgtcagatgacaaattgatctgaaaagctgaaaaggatggtgagtattctctaaaaagtgcgtataagctttgcatgtaaggtttgatggatacatc |
14230099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 466
Target Start/End: Original strand, 25983546 - 25983757
Alignment:
| Q |
264 |
tgaaaaggatggtgaatattatgtaaaaagtgtatataggctttgtatggaatg--------tttggtggatacatcgcatctttgaagaccaggtttct |
355 |
Q |
| |
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||||||||||||||| ||||||||||||||||| || | ||||||||||||| | |||||||||||||| ||||||| ||||||| |||| |
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| T |
25983546 |
tgaaaaggatggtgagtattatgtaaaaagtgtgtacaagctttgtatggaaggtttggtcatttggtggatacattgcatcttctgtgaccaggattct |
25983645 |
T |
|
| Q |
356 |
gagccgg-atttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgtttgcctacacgagttcgtttataggataa |
454 |
Q |
| |
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| | || |||||| || || ||||||||||||| ||||| ||||||| || |||||||| | | | ||||| |||| | ||||||||| | ||||| |
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|
| T |
25983646 |
ggtctggtatttggaggcgaatggttctcccgaaagtcaaaaacttagtatgacgaatgtgtcgggattgtttgtctacgtgggttcgtttaaaagataa |
25983745 |
T |
|
| Q |
455 |
aggtgtccaatg |
466 |
Q |
| |
|
|||||||||||| |
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|
| T |
25983746 |
aggtgtccaatg |
25983757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 438
Target Start/End: Original strand, 43031523 - 43031597
Alignment:
| Q |
363 |
atttggcggttaaaggttctcccgaaaatcaaacacttagtttggagaatgtgttgaggtcgtttgcctacacgag |
438 |
Q |
| |
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|||||||||| |||||||| ||| ||||||||| | ||||||||| | |||||||||||| || | |||||||||| |
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| T |
43031523 |
atttggcggtaaaaggttcccccaaaaatcaaa-atttagtttggtgcatgtgttgaggttgtctacctacacgag |
43031597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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