View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_low_17 (Length: 483)
Name: NF15178_low_17
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 66 - 476
Target Start/End: Original strand, 36328652 - 36329067
Alignment:
| Q |
66 |
ttaaggtgaatggatggtacccgatctaaagcgtgtttataaaggtatttgcacttttttccctccactttaaacatcatttttt-cccgcccactttaa |
164 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
36328652 |
ttaaggtaaagggatggtacccgatctaaagcgtgtttataaaggtatttgcacttttttccctccaatttaaacatcatttttttcccgcccactttaa |
36328751 |
T |
|
| Q |
165 |
acaaaaaccaacttgtttccataggtattcatgaacatcttaaaccaactttgaacttctcttatgctaatcatccaacctactgatatttaa----cga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
36328752 |
acaaaaaccaacttgtttccataggtattaatgaacatcttaaaccaactttgaactcctcttatgctaatcatctaacttactgatatttaattaacga |
36328851 |
T |
|
| Q |
261 |
ctgatttatataggtttgagtgagggaatttgtcaaattcccactaataagcagtgtgaccaatactagtacaactttagaaactacattgtctcctggc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328852 |
ctgatttatataggtttgagtgagggaatttgtcaaattcccactaataagcagtgtgaccaatactagtacaactttagaaactacattgtctcctggc |
36328951 |
T |
|
| Q |
361 |
atcatgggtccattgtcaatcattgatttttgtcaataaatatgaattgttaatgcaatgttacctcctatacgtgacatcctttaagaaaaactcctat |
460 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328952 |
atcatgggtccatggccaatcattgatttttgtcaataaatatgaattgttaatgcaatgttacctcctatacgtgacatcctttaagaaaaactcctat |
36329051 |
T |
|
| Q |
461 |
acatgacatctctgct |
476 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36329052 |
acatgacatctctgct |
36329067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 36325007 - 36325056
Alignment:
| Q |
17 |
gagcgaagcacaaagtaagacaacaaccttcataaaggaagggaactctt |
66 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36325007 |
gagcgaagcacaaagtaaggcaacaaccttcataaaggaagggaactctt |
36325056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University