View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_19 (Length: 461)
Name: NF15178_low_19
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 3308058 - 3308488
Alignment:
| Q |
16 |
aatgaacatggatttttgtggttacctctagcagtatcagaaaaatttgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcag |
115 |
Q |
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| T |
3308058 |
aatgaacatggatttttgtggttacctctagcagtatcagaaaaatttgaatgaaagtgaagacgagtagcctgaagaatcacagaaacaccgcgagcag |
3308157 |
T |
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| Q |
116 |
cttcagaagccattataaaatgattatcaacttcactcaacacttgaatcatatccatattcactctctctttcactcttccaacaacttcttcatcacc |
215 |
Q |
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| T |
3308158 |
cttcagaagccattataaaatgattatcaacttcactcaacacttgaatcatatccatattcactctctctttcactcttccaacaacttcttcatcacc |
3308257 |
T |
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| Q |
216 |
atcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggagga |
315 |
Q |
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| T |
3308258 |
atcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatagcacgccggagagcagcaggcaaatcaggaagaggaggagga |
3308357 |
T |
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| Q |
316 |
ggcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggcgg |
415 |
Q |
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| T |
3308358 |
ggcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgcaaaatctatgagagccgcgccggtgttcttgagtgaggctg |
3308457 |
T |
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| Q |
416 |
cgtaggaggaatgcgcagccgcgaagttgtt |
446 |
Q |
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| T |
3308458 |
cgtaggaggaatgcgcagccgcgaagttgtt |
3308488 |
T |
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