View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_20 (Length: 435)
Name: NF15178_low_20
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 43232410 - 43232045
Alignment:
| Q |
41 |
ttataagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaacaagggtgaaaataa |
140 |
Q |
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| T |
43232410 |
ttataagactgcagctttaagaaggaaaaaagagaaataaaaacataacacaaacttataaataaagggtatgtatacaacaaaacaagggtgaaaataa |
43232311 |
T |
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| Q |
141 |
atgaaacaaaccttacctctgaagaagttgtagtaaagaaggaaaataaagatggagagggttagataagagaga------------agacaaatcgagt |
228 |
Q |
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| T |
43232310 |
atgaaacaaaccttacctctgaagaagttgtagtaaagaaggaaaataaagatggagggggttagataagagagagggttttagagaagacaaaacgagt |
43232211 |
T |
|
| Q |
229 |
tgaagtggattaaaaatcaagtcaacctaaataagtatgtaataagggatcatgaaggcatttacacacacacaatagatttgaaattttgaattctaaa |
328 |
Q |
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| T |
43232210 |
tgaagtggattaaaaatcaagtcaacgtaaataagtatgtaataagggatcatgaaggcatttacacacacacaatagatttgaaattttgaattctgca |
43232111 |
T |
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| Q |
329 |
tcatcttccaagagaatcccaatttagctttctgtgtgtaacaaatatcaagtagaggtcttatat |
394 |
Q |
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| T |
43232110 |
tcatcttccaagagaatcccaatttagctttctgtgtgtaacaaatatcaagtagaggtctcatat |
43232045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 43232018 - 43231984
Alignment:
| Q |
390 |
tatatacaagtaagatgacccgtaaacataatatg |
424 |
Q |
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| T |
43232018 |
tatatacaagtaagatgacccataaacataatatg |
43231984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 29362302 - 29362170
Alignment:
| Q |
45 |
aagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaacaagggtgaaaataaatga |
144 |
Q |
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|||| |||| |||| ||||||||||| ||||| | ||| | |||||||| ||||||||||| |||||| ||| ||||||||| |||| ||||||| |
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| T |
29362302 |
aagattgcaactttcagaaggaaaaaagagaagaataaagaaaacacaaagttataaataaagggtatgcata----aaaacaaggatgaagttaaatga |
29362207 |
T |
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| Q |
145 |
aacaaaccttacctctgaagaagttgtagtaaagaag |
181 |
Q |
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|||||| || |||| ||| | |||| |||||||||| |
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| T |
29362206 |
aacaaaactcacctaagaaaatgttgaagtaaagaag |
29362170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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