View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_21 (Length: 425)
Name: NF15178_low_21
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 208 - 413
Target Start/End: Complemental strand, 32791856 - 32791653
Alignment:
| Q |
208 |
tacaaggggtgacacagacagcttctatacnnnnnnnccttttgaatcataattctctaataaaataatattctctcttattctctttttgtcttctttg |
307 |
Q |
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| T |
32791856 |
tacaaagggtgacacagacagcctctatactttttttc-ttttcaatcataattctctaataaaataatattctctcttattctctttttgtcttctttg |
32791758 |
T |
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| Q |
308 |
ttaaaaccccaagcaagccccacattccatccctctctcttcccttgatcccctagagctaatttgtctctcccacnnnnnnncatttggatcttcttct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
32791757 |
ttaaaaccccaagcaagccccacattccatccctctctcttcccttgatcccattgagctaatttgtctctcccac-tttcttcatttggatcttcttct |
32791659 |
T |
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| Q |
408 |
tccctt |
413 |
Q |
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|||||| |
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| T |
32791658 |
tccctt |
32791653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 32791949 - 32791902
Alignment:
| Q |
110 |
attaaccaagcttg---gcaaagataataggaatcaatccatttgatt |
154 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
32791949 |
attaaccaagcttgatagcaaagataataggaatccatccatttgatt |
32791902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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