View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15178_low_22 (Length: 407)

Name: NF15178_low_22
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15178_low_22
NF15178_low_22
[»] chr1 (6 HSPs)
chr1 (1-392)||(52435932-52436317)
chr1 (1-184)||(11084976-11085160)
chr1 (1-184)||(33063043-33063227)
chr1 (1-186)||(45598645-45598831)
chr1 (1-185)||(40312539-40312724)
chr1 (2-184)||(17038889-17039072)
[»] chr5 (6 HSPs)
chr5 (1-185)||(34404749-34404934)
chr5 (4-188)||(17920101-17920285)
chr5 (1-185)||(26182550-26182735)
chr5 (1-184)||(7897233-7897416)
chr5 (1-185)||(20287219-20287404)
chr5 (1-185)||(20497467-20497652)
[»] chr7 (15 HSPs)
chr7 (1-184)||(48796938-48797120)
chr7 (1-186)||(12560529-12560715)
chr7 (1-179)||(3285623-3285802)
chr7 (1-185)||(30226726-30226911)
chr7 (1-188)||(14976090-14976276)
chr7 (1-188)||(15405566-15405752)
chr7 (1-178)||(7620739-7620917)
chr7 (1-188)||(11559816-11560004)
chr7 (1-184)||(11629297-11629468)
chr7 (90-151)||(4541991-4542052)
chr7 (1-101)||(24050108-24050209)
chr7 (105-188)||(42783537-42783620)
chr7 (90-188)||(9567661-9567758)
chr7 (105-186)||(4793891-4793971)
chr7 (136-188)||(2077306-2077357)
[»] chr4 (9 HSPs)
chr4 (1-184)||(24143791-24143975)
chr4 (1-171)||(19894143-19894314)
chr4 (11-188)||(11324581-11324759)
chr4 (1-186)||(22555631-22555818)
chr4 (1-184)||(23541900-23542084)
chr4 (3-179)||(46738584-46738761)
chr4 (1-184)||(15687016-15687201)
chr4 (1-139)||(11905747-11905886)
chr4 (2-186)||(25353949-25354134)
[»] chr8 (9 HSPs)
chr8 (1-179)||(8730588-8730767)
chr8 (1-184)||(17880055-17880239)
chr8 (1-184)||(18676448-18676631)
chr8 (1-188)||(17280545-17280733)
chr8 (12-184)||(33465478-33465650)
chr8 (1-186)||(37154840-37155024)
chr8 (23-185)||(39081586-39081749)
chr8 (1-178)||(22876672-22876853)
chr8 (90-147)||(23250488-23250545)
[»] chr3 (6 HSPs)
chr3 (1-185)||(8749697-8749882)
chr3 (1-185)||(9037363-9037548)
chr3 (1-184)||(9030738-9030922)
chr3 (104-184)||(11560808-11560888)
chr3 (90-186)||(13920274-13920369)
chr3 (103-185)||(7478479-7478560)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-179)||(16293-16472)
[»] chr2 (6 HSPs)
chr2 (1-184)||(29566670-29566854)
chr2 (1-184)||(18605913-18606097)
chr2 (1-184)||(18766336-18766520)
chr2 (1-184)||(13314282-13314466)
chr2 (107-184)||(20068793-20068870)
chr2 (136-186)||(25347959-25348008)
[»] chr6 (8 HSPs)
chr6 (1-184)||(19216612-19216796)
chr6 (13-185)||(9385284-9385457)
chr6 (1-185)||(16136896-16137081)
chr6 (1-184)||(20003741-20003925)
chr6 (12-184)||(32452656-32452829)
chr6 (1-184)||(15002477-15002661)
chr6 (106-189)||(12444058-12444141)
chr6 (109-185)||(16308664-16308739)
[»] scaffold0143 (1 HSPs)
scaffold0143 (12-184)||(36966-37139)
[»] scaffold0032 (1 HSPs)
scaffold0032 (45-184)||(103609-103749)
[»] scaffold0022 (1 HSPs)
scaffold0022 (106-187)||(3884-3965)
[»] scaffold0645 (1 HSPs)
scaffold0645 (104-184)||(1807-1887)
[»] scaffold0480 (1 HSPs)
scaffold0480 (90-188)||(11951-12048)
[»] scaffold0034 (1 HSPs)
scaffold0034 (90-185)||(50204-50298)
[»] scaffold0520 (1 HSPs)
scaffold0520 (90-179)||(5738-5826)
[»] scaffold0064 (1 HSPs)
scaffold0064 (90-151)||(45295-45356)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 52436317 - 52435932
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  52436317 ctaaaaacacgcagcttgaccaacaaaaataaagacgttgattccttaaataaaatagtgcgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccat 52436218  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatctttttgccgaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||| ||||||||||||    
T  52436217 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaaacaaagccaatatacaaatatccaacaatttttttgccgaat 52436118  T
Q  200 attaattattgattgatttctctattcactgttcttaatcaacatacaactacaaatagaggcgacgacaaacacacaaggaaatatttgaagnnnnnnn 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |           
T  52436117 attaattattgattgatttctctattcactgttcttaatcaacatacaactacaaatagaggcaacgacaaacacacaaggaaatatttgatg------- 52436025  T
Q  300 nnnnnnggattataaaaaatctatataactgactccggttagtgagatacaacttgcttannnnnnnaaaggggaataaaatttggttattgt 392  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  52436024 ttttttggattataaaaaatctatataactgactccggttagtgagatacaacttgcttatttttttaaaggggaataaaatttggttattgt 52435932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 11085160 - 11084976
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||| ||| ||| |||| |||||||||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  11085160 ctaaaaacacgcagcttgaccaacaagaattaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggttaactgaaccat 11085061  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  11085060 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatccaaca 11084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33063043 - 33063227
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||| || |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33063043 ctaaaatcacgcagcttgaccaacaagaataaaggcgtggatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccat 33063142  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||| ||||||| ||||    
T  33063143 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 33063227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 45598831 - 45598645
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| ||||||||||| |||| |||||||||||||| || |||| ||||||||||||||||    
T  45598831 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaacagcgtgtgcgtaaaacaagacagggtgcaggtcaactgaaccat 45598732  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    || |||||||||||||||||||||||||||||||| | |||||||||||||| |||||  ||||| |||||  ||||||| ||||||    
T  45598731 gccaggatgttggcacatcgtgttcaacatctcacataaatatttgttttagccaaaaatgaagctaatattcaaatatccaacaat 45598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 40312724 - 40312539
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||||||  ||||||||||||||| ||||||||||| |||| ||||| ||||||| || ||| |||||||||||||||||| ||||||||||||||||    
T  40312724 ctaaaaacacacagcttgaccaacaagaataaagacgtggattccttaattaaaataacgtgtgtgtaaaacaaggcaaggtgcaggtcaactgaaccat 40312625  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || |||||||||||||||| ||| ||||||||||| ||||||||  ||||||||||||| ||||||||| || ||||||| |||||    
T  40312624 gccaggatgttggcacatcttgtacaacatctcacatgaatattaattttaggcaaaagtgaagccaatctacaaatatccaacaa 40312539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 17038889 - 17039072
Alignment:
Q  2 taaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatg 100  Q
    |||| ||| |||| ||||||||||  ||| ||| ||| |||| ||||||||||  | ||||||||||||| ||||||||||  ||  ||    |||||||    
T  17038889 taaagacacgcaggttgaccaacactaatgaaggcgtggattccttaaataaacgaacgcgtgcgtaaaataaggcaaggtacagaacacacaaaccatg 17038988  T
Q  101 caaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  17038989 cctggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 17039072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 34404934 - 34404749
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  34404934 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggaagggtgcaggtcaactgaaccat 34404835  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  34404834 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 34404749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 17920285 - 17920101
Alignment:
Q  4 aaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgca 102  Q
    |||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||||     
T  17920285 aaaacacgcagcttgaccaacaacaataaaggcgtggattccttaaataaaatagcgcgtgctaaaaacaaggca-ggtgcaggtcaactgaaccatgcc 17920187  T
Q  103 aggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  17920186 aggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaatct 17920101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 26182735 - 26182550
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| |||| ||||||||||||||||    
T  26182735 ctaaaaacacgcagcttgaccaacaagaataaagacgtggattccttaaataaaatggtgcatgcgtaaaacaaggcagggtgcaggtcaactgaaccat 26182636  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || ||||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||| ||||||| ||||||| |||||    
T  26182635 gccaggatgttggcacatcgtgttcaacatctcctatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaacaa 26182550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 7897416 - 7897233
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||| ||| |||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||    
T  7897416 ctaaagacacgcagcttgaccaacaagaataaatacgtggattccttaaataaaatagcgcgtgcgtaaaactaggtaaggtgcaggtcaactgaac-at 7897318  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||| ||||    
T  7897317 gccaggatgttgacacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgacgccaatatacaaatatccaaca 7897233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 20287219 - 20287404
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| | |||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  20287219 ctaaaaacacgtagcttgaccaacaagaataaagacgtggattccttaaataaaatagcgcgtgcgaaaaacaaggcagggtggaggtcaactgaaccat 20287318  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || |||||||||||||||  |||||||||||||| |||||||||| |||||  |||||| |||||||| ||| ||||||| |||||    
T  20287319 gccaggatgttggcacattatgttcaacatctcatttgaatatttattttatacaaaagtgaagccaacatacaaatatccaacaa 20287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 20497652 - 20497467
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||| ||| ||||||| ||| |||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  20497652 ctaaaaacacgcagcttgaccatcaagaataaaggcgtggattccttaaataaaatagcgagtgcgtaaaacaaggcagggtgcaggtcaactgaaccat 20497553  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
     | | |||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||| |||||    
T  20497552 accaagatgttggcacatcttgtacaacatctcacatgaatatttattttaggcaaaagtgaagccaatataaaaatatccaacaa 20497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 48797120 - 48796938
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  48797120 ctaaaaacatgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccat 48797021  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || |||||||||||||||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||| ||||||| ||||    
T  48797020 gccaggatgttggcacatcgtgttcaacatctca--tgaatatttattttaggcaaaagtgaagccaatatacaaatatccaaca 48796938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 12560715 - 12560529
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||| ||||| |||||||  || |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  12560715 ctaaaaacaagcagcttgactaacaagaataaaggtgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtggaggtcaactgaaccat 12560616  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||| ||||||    
T  12560615 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaacaat 12560529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 3285802 - 3285623
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| |||||| |||| |||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  3285802 ctaaaaacacgcagcttgaccaacaagaataaatacgtggattccttaaataaaatagcacgtgcgtaaaacaaggcagggtgcaggtcaactgaaccat 3285703  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatc 179  Q
    || |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||| |||||||    
T  3285702 gccaggatgttggcatatcgtgttcaacatctcacataaatatttgttttaggcaaaagtgaagtcaatatacaaatatc 3285623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 30226726 - 30226911
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||| |||||||| |||||||||||||||| |||| |||||||||||| |||    
T  30226726 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaatataatagcgcatgcgtaaaacaaggcagggtgcaggtcaactgaatcat 30226825  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  30226826 gccaggatgttggcacatcgtgtccaacatctcccatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 30226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 14976090 - 14976276
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||    
T  14976090 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaagtcaactaaaccat 14976189  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    || ||||| |||||||||||||||||||||||  || |||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  14976190 gccaggatattggcacatcgtgttcaacatct--ctcgaatatttgttttaggaaaaagtgaagccaatatacaaatatccaacaatct 14976276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 15405566 - 15405752
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||    
T  15405566 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaagtcaactaaaccat 15405665  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    || ||||| |||||||||||||||||||||||  || |||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  15405666 gccaggatattggcacatcgtgttcaacatct--ctcgaatatttgttttaggaaaaagtgaagccaatatacaaatatccaacaatct 15405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7620739 - 7620917
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||| ||||||||||| ||||||  |||||||  |||||||||||||||||||||||||||||||||| | || | |||||| ||||| |    
T  7620739 ctaaaaacacgcagtttgaccaacaagaataaaagcgttgataccttaaataaaatagcgcgtgcgtaaaacaaggcaggatgcatgtcaaccgaacctt 7620838  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatat 178  Q
    || ||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||  |||||||||||| ||||||    
T  7620839 gccaggatgttgacacatcgtgtttaacatctcacatgaatatttattttaggcaaaaatgaagccaatatacaaatat 7620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 11560004 - 11559816
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||| || |||||||||||||||| ||||||| ||| |||| ||||||||||  | |||||||| ||||||||||||| |  ||||||||| ||||||    
T  11560004 ctaaaagcacgcagcttgaccaacaagaataaaggcgtggattccttaaataaataaacgcgtgcgaaaaacaaggcaagctataggtcaactaaaccat 11559905  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    || ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||  || ||||| ||  ||||||| ||||||||    
T  11559904 gccaggatattggaacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaatgaggccaacattcaaatatccaacaatct 11559816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 11629297 - 11629468
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||  ||| |||| ||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  11629297 ctaaaaacacgcagcttgaccaacaagaataaaagcgtggattcctttaataaaaaagcgtgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccat 11629396  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || ||||             ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  11629397 gccagga-------------tgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 11629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 4542052 - 4541991
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttag 151  Q
    |||||||||||| |||||||||| |||| |||| ||||||| ||||||||||||||||||||    
T  4542052 actgaaccatgccaggatgttggaacatggtgtccaacatcacacttgaatatttgttttag 4541991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 24050108 - 24050209
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggt-gaggtcaactgaaccat 99  Q
    |||||| ||||||||||||||||||| ||| ||| |||  ||| ||||||||||  | ||||||| |||||| |||||||||  ||||||||||||||||    
T  24050108 ctaaaagcatgcagcttgaccaacaataattaaggcgtgaattccttaaataaataaacgcgtgcataaaaccaggcaaggtacaggtcaactgaaccat 24050207  T
Q  100 gc 101  Q
    ||    
T  24050208 gc 24050209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 42783537 - 42783620
Alignment:
Q  105 gatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    |||||||| |||| |||||| |||||| |  ||||||||||||||||||||||| |||||||| ||| ||||||| | ||||||    
T  42783537 gatgttggaacattgtgttccacatctgaagtgaatatttgttttaggcaaaagtgaagccaacatacaaatatccatcaatct 42783620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 9567661 - 9567758
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    |||||||  ||| |||||||||| ||||||| | ||||||| ||| ||||||||||||||| ||||||| || ||||| | | ||||||| ||||||||    
T  9567661 actgaactgtgctaggatgttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaggccaacacacaaatatccaacaatct 9567758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 4793971 - 4793891
Alignment:
Q  105 gatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    |||||||| ||||||| | ||||||| ||| ||||||||||||||| ||||||| |||||||| | | ||||||| ||||||    
T  4793971 gatgttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaagccaacacacaaatatccaacaat 4793891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 2077306 - 2077357
Alignment:
Q  136 tgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    ||||||||||||||||||||||  |||||||| ||| ||||||| ||||||||    
T  2077306 tgaatatttgttttaggcaaaa-agaagccaacatacaaatatccaacaatct 2077357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 24143791 - 24143975
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  24143791 ctaaaaacatgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgcgaaaaactaggcaaggtgtaggtcaactgaaccat 24143890  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||| ||||||| ||||    
T  24143891 gccaggatgttggcacatcgtgttcaacatctcatatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaaca 24143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 19894314 - 19894143
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||| ||||||||||||| |||| |||||||||||| |||    
T  19894314 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagcgcgtgtgtaaaacaaggcagggtgcaggtcaactgaatcat 19894215  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatata 171  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19894214 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatata 19894143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 11324759 - 11324581
Alignment:
Q  11 gcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgt 109  Q
    ||||||| |||| ||| ||||||| ||| ||||  ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||    
T  11324759 gcagctttaccatcaagaataaaggcgtggattggttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccatgccaagatgt 11324660  T
Q  110 tggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  11324659 tggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaatct 11324581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22555631 - 22555818
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaacca- 98  Q
    ||||||||| |||||||||||| ||| ||||||| |||  ||| |||||||||||| |||| |||||||||||||||| |||| |||||||||||||||     
T  22555631 ctaaaaacacgcagcttgaccatcaagaataaaggcgtgaattccttaaataaaattgcgcatgcgtaaaacaaggcagggtgcaggtcaactgaaccaa 22555730  T
Q  99 tgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    ||| | |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  22555731 tgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaat 22555818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23541900 - 23542084
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||| | ||||||||||| |||| ||||||| ||| |||| ||||||||||||| |||||||| |||||||||||| ||  ||||||| ||||||||    
T  23541900 ctaaaaatacgcagcttgaccgacaagaataaaggcgtggattccttaaataaaataacgcgtgcgaaaaacaaggcaaagtacaggtcaattgaaccat 23541999  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || | ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  23542000 gccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 23542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 46738761 - 46738584
Alignment:
Q  3 aaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgc 101  Q
    ||||||| |||| ||||||||||| |||||||||||  ||| ||||||||||| |||| ||||||||||||| | | | || |||||||||||||||||     
T  46738761 aaaaacacgcagtttgaccaacaagaataaagacgtgaattccttaaataaaaaagcgtgtgcgtaaaacaaagtaggatgcaggtcaactgaaccatgt 46738662  T
Q  102 aaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatc 179  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||| |||||||    
T  46738661 caggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaagtgaagacaatatacaaatatc 46738584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 15687201 - 15687016
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtca-actgaacca 98  Q
    |||||| || |||||||||||||||| ||| ||| ||| |||| ||||||||||  | | ||||||||||||||||||||||  ||| || || ||||||    
T  15687201 ctaaaagcacgcagcttgaccaacaagaattaaggcgtggattccttaaataaacaaacacgtgcgtaaaacaaggcaaggtacagggcataccgaacca 15687102  T
Q  99 tgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    ||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  15687101 tgccaggatgttggaacatcgtgtacaacatcacacttgaatatttgttttaggcaaaagtgaagccaacatacaaatatccaaca 15687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 11905747 - 11905886
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtga-ggtcaactgaaccat 99  Q
    |||||| || |||||||||||||||| ||| ||| ||| |||| ||||||||||  | |||||| |||||||||||||||||   |||||||||||||||    
T  11905747 ctaaaagcacgcagcttgaccaacaagaattaaggcgtggattccttaaataaataaacgcgtgtgtaaaacaaggcaaggtaccggtcaactgaaccat 11905846  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaa 139  Q
    || |||||||||| ||||||||| |||||||||| |||||    
T  11905847 gccaggatgttggaacatcgtgtccaacatctcatttgaa 11905886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 25354134 - 25353949
Alignment:
Q  2 taaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatg 100  Q
    |||| ||| |||| ||||||||||  ||| ||| ||| |||| ||||||||||  | ||||||||||||| || |||||||  ||  ||    |||||||    
T  25354134 taaagacacgcaggttgaccaacactaatgaaggcgtggattccttaaataaacgaacgcgtgcgtaaaataaagcaaggtacagaacacacaaaccatg 25354035  T
Q  101 caaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    |  ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||| ||||||| ||||||| ||||||    
T  25354034 cctggatgttggcacatcgtgttcaacatctcacatgaatattcattttaggcaaaagtgaaggcaatatacaaatatccaacaat 25353949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 8730588 - 8730767
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  8730588 ctaaaaacacgcagcttgaccaacaagaataaagacatggattgcttaaataaaatagcgcgtgcgtaaaacaaggcagggtgcaggtcaactgaaccat 8730687  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatc 179  Q
    || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||    
T  8730688 gccaggatgttgtcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatc 8730767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 17880239 - 17880055
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| ||| |||||||||||| |||||| | || |||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17880239 ctaaaaacacgcaacttgaccaacaagaataaaaatgtggattccttagataaaatagcgcgtgcgtaaaacaaggcaaggtgcaggtcaactgaaccat 17880140  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || | |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| ||| ||| ||||    
T  17880139 gccaagatgttggcacatcgtgttcaacatctcacatgcatatttgttttaggcaaaagtgaagccaatatacaaagatccaaca 17880055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18676448 - 18676631
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtgaggtcaactgaaccatg 100  Q
    ||||| ||| |||||||||||||||| ||| ||| | | |||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  18676448 ctaaatacacgcagcttgaccaacaagaattaaggcatggattccttaaataaaatagcacgtgcgtaaaacaaggcagggtcaggtcaactgaaccatg 18676547  T
Q  101 caaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||||||||||    
T  18676548 ccaggatgttggcacatcgtgctcaacatctcacatgaatatttgttttaggcaaaagtgaaatcaatatacaaatatctaaca 18676631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 17280545 - 17280733
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||| ||||||| |||||||  || |||| |||||||||||||||||||||| |||||||||||||||  | ||||||||||||||    
T  17280545 ctaaaaacacgcagcttggccaacaagaataaaggggtggattccttaaataaaatagcgcgtgcgaaaaacaaggcaaggtacaagtcaactgaaccat 17280644  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    || | ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| || |||||    
T  17280645 gccatgatgttgacacatcttgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaagaatct 17280733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 33465650 - 33465478
Alignment:
Q  12 cagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgtt 110  Q
    ||||||||||||||| ||||||| | | |||| |||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  33465650 cagcttgaccaacaagaataaaggcatggattccttaaataaaataatgcgtgcgaaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtt 33465551  T
Q  111 ggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| ||||    
T  33465550 ggcacatcgtgtccaacatctcacttgaatattt-ttttaggcaaaagtgaagccaacatacaaatatccaaca 33465478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 37155024 - 37154840
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| |||||||||||  ||| |||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  37155024 ctaaaaacacgcagcttgaccaacaagaataaagacgtgaattccttaaa-aaaatagcgcgtgcgtaaaacaacgcagggtgcaggtcaactgaaccat 37154926  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    || |||||||||||||||||||||||||||||  | | ||||||||||||||| ||||  |||||||||||| | ||||| ||||||    
T  37154925 gccaggatgttggcacatcgtgttcaacatct-gcattaatatttgttttaggtaaaaatgaagccaatatacatatatccaacaat 37154840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 39081586 - 39081749
Alignment:
Q  23 acaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgttggcacatcgtg 121  Q
    |||| ||||||| ||| |||| ||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||  ||||||||| |||  ||||    
T  39081586 acaagaataaaggcgtggattccttaaataaaatagcgcatgcgtaaaacaaggcagggtgcaggtcaactaaaccatgtcaggatgttgacacgccgtg 39081685  T
Q  122 ttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||| |||||    
T  39081686 ttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatatccaacaa 39081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 22876672 - 22876853
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaa----atagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaa 95  Q
    |||||| || |||||||||||| ||| ||||||||||| |||| ||||||||||    | | | |||||| |||||||||||||||| || |||||||||    
T  22876672 ctaaaagcacgcagcttgacca-caagaataaagacgtggattccttaaataaataaaaaaacacgtgcgaaaaacaaggcaaggtgcagatcaactgaa 22876770  T
Q  96 ccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatat 178  Q
    |||||| |||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  22876771 ccatgccaggatgttgggacatcttgtccaacatctcacttaaatatttgttttaggcaaaagtgaagccaacatataaatat 22876853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 23250488 - 23250545
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgtt 147  Q
    |||||||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||||    
T  23250488 actgaaccatgccaggatgttggaacatcgtgtccaatatcacacttgaatatttgtt 23250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 8749697 - 8749882
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||| || ||||||||||||||||||||| | ||||||||||||||    
T  8749697 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagagcatgcgtaaaacaaggcaaggtgcaagtcaactgaaccat 8749796  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  8749797 gccaggatgttggcacatcatgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 8749882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 9037363 - 9037548
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  9037363 ctaaaaacacgcagcttgaccaacaagaataaaggcgtggattccttaaataaaatagtgcgtgcgtaaaacaaggcaaggtgcacgtcaactgaaccat 9037462  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||| || ||||||| |||||    
T  9037463 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgtttgaggcaaaagtgaaaccaatgtacaaatatccaacaa 9037548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 9030922 - 9030738
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||  |||||||| || ||||  |||||||||||||||||||| |||||| || ||  ||| || |||||||||||||    
T  9030922 ctaaaaacacgcagcttgaccaacatgaataaagatgtggattctttaaataaaatagcgcgtgcataaaacgagacagtgtgcagatcaactgaaccat 9030823  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  9030822 gccaggatgttgacacatcgtgttcaatatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatccaaca 9030738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 11560888 - 11560808
Alignment:
Q  104 ggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||| ||| ||||    
T  11560888 ggatgttggcacatcgtgttcaacatctcacatgaatattcgttttaagcaaaagtgaagccaatatacaaacatccaaca 11560808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 13920274 - 13920369
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    |||||||  ||| |||||||| | ||||||| | ||||||| ||| ||||||||||||||| ||||||| |||||||| | | ||||||||||||||    
T  13920274 actgaactgtgctaggatgttagaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaagccaacacacaaatatctaacaat 13920369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 7478560 - 7478479
Alignment:
Q  103 aggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    |||||||||| ||||||| | ||||||| ||| ||||||||||||||| |||||||  ||||||| | | ||||||| |||||    
T  7478560 aggatgttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtaaagccaacacacaaatatccaacaa 7478479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 16472 - 16293
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| |||||||||||  ||| ||||||||||||||||||||||||||| |||||| |||| |||| || ||||||||    
T  16472 ctaaaaacacgcagcttgaccaacaagaataaagacgtgcattccttaaataaaatagcgcgtgcgtaaaataaggcagggtgcaggttaattgaaccat 16373  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatc 179  Q
    || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||    
T  16372 gctaggatgttggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatatacaaatatc 16293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 29566670 - 29566854
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||| || ||| |||||||||||| ||||||| ||| |||| ||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||    
T  29566670 ctaaaagcacgcaacttgaccaacaagaataaaggcgtggattccttaaataaaataacgcgtgcgaaaaacaaggcaatgtgcaggtcaactgaaccat 29566769  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  29566770 gccaggatgttggcacattgtgtccaacatctcacttgaatatttgttttaggcaaaagtgaagccaacatataaatatccaaca 29566854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18606097 - 18605913
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||| |||| |||||||||||||||| ||||||||||| |||| ||||| |||||||| | ||||||||||||||| | |||| ||||||| ||||| ||    
T  18606097 ctaagaacacgcagcttgaccaacaagaataaagacgtggattccttaagtaaaatagtgtgtgcgtaaaacaaggtagggtgcaggtcaattgaactat 18605998  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  18605997 gccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 18605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18766336 - 18766520
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||||||| ||||| |||||  ||||||  ||| |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  18766336 ctaaaaacatgcaacttgaacaacacgaataaaagcgtggattccttaaataaaatagcgcgtgcgtaaaacaaggtaaggtgcaggtcaactgaaccat 18766435  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |  |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |||| ||||||| ||||||| ||||    
T  18766436 ggcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagtcaatatacaaatatccaaca 18766520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 13314466 - 13314282
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||| || ||| |||||||||||| ||||||| ||| |||| || |||||||||| |||||| | |||||||||||||||| ||||||||||||||||    
T  13314466 ctaaaagcacgcaacttgaccaacaagaataaaggcgtggattcctcaaataaaataacgcgtgtgaaaaacaaggcaaggtgcaggtcaactgaaccat 13314367  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
     | | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  13314366 tccaagatgttggcacatcatgtccaacatctcacttgaatatttgttttaggcaaaagtgaagccaacatacaaatatccaaca 13314282  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 20068870 - 20068793
Alignment:
Q  107 tgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |||||||||||||| ||||||||||||| | |||||||||||||| |||||| |||||||||||| ||||||| ||||    
T  20068870 tgttggcacatcgttttcaacatctcacataaatatttgttttagacaaaagtgaagccaatatacaaatatccaaca 20068793  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 25347959 - 25348008
Alignment:
Q  136 tgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaat 186  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||||||    
T  25347959 tgaatatttgttttag-caaaagtgaggccaatatataaatatctaacaat 25348008  T

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Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19216612 - 19216796
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| |||||||||||||||| ||||||| ||| | || ||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||    
T  19216612 ctaaaaacacgcagcttgaccaacaagaataaaggcgtgggttccttaaataaaatagcgcgtgcgtaaaataaggcagggtgcaggtcaacttaaccat 19216711  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| | ||||||| ||||    
T  19216712 gccaggatattggcacatcgtgttcaacatctcacatgaatatttattttaggcaaaagtgaagccaatagacaaatatccaaca 19216796  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 9385284 - 9385457
Alignment:
Q  13 agcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgttg 111  Q
    |||||||||||||| ||||||| ||| |||| |||||||||| ||| || |||| |||||||||||||||  ||||||||||||||||||| ||||||||    
T  9385284 agcttgaccaacaagaataaaggcgtggattccttaaataaactagtgcatgcgaaaaacaaggcaaggtccaggtcaactgaaccatgcagggatgttg 9385383  T
Q  112 gcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||| |||||    
T  9385384 gcacatcgtgtccaacatctcacttgaatatttgttttaagcaaaagtgaatccaatatacaaatatccaacaa 9385457  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 16137081 - 16136896
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| ||| |||||||||||| ||||||| |||  ||| |||||||||||||| ||||  |||||||||||||  ||| ||||||||||||||||    
T  16137081 ctaaaaacacgcaacttgaccaacaagaataaaggcgtgcattccttaaataaaatagtgcgtctgtaaaacaaggcagagtgcaggtcaactgaaccat 16136982  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    |  |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  16136981 gacaggatgttggcacatcgtgttcaacatctcacatgaatatttgtttttggcaaaagtgaagccaatatacaaatatccaacaa 16136896  T

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Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 20003741 - 20003925
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    ||||||||| ||| |||||||||||| ||||||   || |||| ||||||||||| ||||| ||||||||||||||||||||| | ||||||| ||||||    
T  20003741 ctaaaaacacgcaacttgaccaacaagaataaaagtgtggattccttaaataaaaaagcgcatgcgtaaaacaaggcaaggtgcaagtcaactaaaccat 20003840  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || ||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||| ||||||| ||||    
T  20003841 gctaggatgttgacacatcgtgttcaacatcccacatgaatatttcttttaggcaaaagtgaagccaatatacaaatatccaaca 20003925  T

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Target: chr6; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 32452656 - 32452829
Alignment:
Q  12 cagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgtt 110  Q
    |||||||||||| || ||||||| ||| |||| ||||||||||||| |||||| | ||||||||||||| || | |||||||||||||||| ||||||||    
T  32452656 cagcttgaccaataagaataaaggcgtggattccttaaataaaataacgcgtgggaaaaacaaggcaagatgcatgtcaactgaaccatgccaggatgtt 32452755  T
Q  111 ggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||| |||| ||| ||| ||||||| ||||    
T  32452756 ggcacatcgtgtccaacatctcacttgaatatttattttaggcaaaagtgaaggcaacatacaaatatccaaca 32452829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 15002661 - 15002477
Alignment:
Q  1 ctaaaaacatgcagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccat 99  Q
    |||||| || ||| |||||||||||| | ||||| ||| |||| |||||| ||  || |||||||| |||||||||||| ||| ||||||||||||||||    
T  15002661 ctaaaagcacgcaccttgaccaacaagagtaaaggcgtggattccttaaaaaagttaacgcgtgcgaaaaacaaggcaatgtgcaggtcaactgaaccat 15002562  T
Q  100 gcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    || | |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||| ||| ||||||| ||||    
T  15002561 gccacgatgttggcacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaaagaaaccaacatacaaatatccaaca 15002477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 12444141 - 12444058
Alignment:
Q  106 atgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatctt 189  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| |||| ||||    
T  12444141 atgttggcacatcatgttcaacatctcacatgaatattcgttttaggcaaaagtgaagccaatatacaaatatccaacactctt 12444058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 16308739 - 16308664
Alignment:
Q  109 ttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    |||| ||||||| | ||||||| ||| ||||||||||||||| ||||||| |||||||| | | ||||||| |||||    
T  16308739 ttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaagccaacacacaaatatccaacaa 16308664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 36966 - 37139
Alignment:
Q  12 cagcttgaccaacaaaaataaagacgttgatttcttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgtt 110  Q
    ||||||||||||||| ||||||| | | |||| |||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  36966 cagcttgaccaacaagaataaaggcatggattccttaaataaaataatgcgtgcgaaaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtt 37065  T
Q  111 ggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |||||||||||| |||||||||||||||||  || ||||||||||||| |||||||| ||| ||||||| ||||    
T  37066 ggcacatcgtgtccaacatctcacttgaattatttttttaggcaaaagtgaagccaacatacaaatatccaaca 37139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 103609 - 103749
Alignment:
Q  45 cttaaataaaatagcgcgtgcgtaaaacaaggcaaggtg-aggtcaactgaaccatgcaaggatgttggcacatcgtgttcaacatctcactt-gaatat 142  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||| || || || | | ||||||||||||| ||||||    
T  103609 cttaaataaaataacgcgtgcg-aaaacaaggcaaggtgcaggtcaactgaaccatgccaggatgtaggaacgtcatatccaacatctcactttgaatat 103707  T
Q  143 ttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    |||||||||||||||| |||||||| ||  ||||||| ||||    
T  103708 ttgttttaggcaaaagtgaagccaacattcaaatatcgaaca 103749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 3884 - 3965
Alignment:
Q  106 atgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatc 187  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  3884 atgttggtacatcgtcttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaatc 3965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 1807 - 1887
Alignment:
Q  104 ggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaaca 184  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||| ||| ||||    
T  1807 ggatgttggcacatcgtgttcaacatctcacatgaatattcgttttaagcaaaagtgaagccaatatacaaacatccaaca 1887  T

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Target: scaffold0480 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 11951 - 12048
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaatct 188  Q
    |||||||| ||| |||||||||  ||||||||| ||||||| ||||||| ||||||||||| ||||||| | || ||| ||| ||||||| ||||||||    
T  11951 actgaaccgtgccaggatgttgaaacatcgtgtccaacatcacacttgattatttgtttta-gcaaaagtgcagtcaacatacaaatatccaacaatct 12048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 50298 - 50204
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatctaacaa 185  Q
    |||||||  ||| |||||||||| ||||||| | ||||||| ||| ||||||||||||||| ||||||| |||||||| | | ||||||| |||||    
T  50298 actgaactgtgctaggatgttggaacatcgtatccaacatcacacatgaatatttgtttta-gcaaaagtgaagccaacacacaaatatccaacaa 50204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 5738 - 5826
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttaggcaaaagcgaagccaatatataaatatc 179  Q
    |||||||||||| |||||||||| ||||| | | |||||||  |  ||||||||||||||||| ||||| ||||| |||||  |||||||    
T  5738 actgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttagg-aaaagtgaagctaatattcaaatatc 5826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 45356 - 45295
Alignment:
Q  90 actgaaccatgcaaggatgttggcacatcgtgttcaacatctcacttgaatatttgttttag 151  Q
    |||||||||||| | |||||||| ||||||| | |||||||  || ||||||||||||||||    
T  45356 actgaaccatgccaagatgttggaacatcgtatccaacatcatacatgaatatttgttttag 45295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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