View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_24 (Length: 398)
Name: NF15178_low_24
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 116 - 382
Target Start/End: Original strand, 7947022 - 7947288
Alignment:
| Q |
116 |
cttgatgatgatgacaatgaaggcctcagcatccatttgtagtaacagcttgatcttctattctcctccctcaacacaaaactctcacactttctcacct |
215 |
Q |
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| T |
7947022 |
cttgatgatgatgacaatgaaggcctcagcatccatttgtagtaacagcttgatcttctcttctcctccctcaacacaaaactctcacactttctcacct |
7947121 |
T |
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| Q |
216 |
tttctggtcaaatccatggctactcccaaaccagttactgtaacttctaaaaaggtcagtgtaaaacaataactatattattacttgttattatgatttt |
315 |
Q |
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| T |
7947122 |
tttctggtcaaatccatggctactcccaaaccagttactgtcacttctaaaaaggtcagtgtaaaacaataactatattattacttgttattatgatttt |
7947221 |
T |
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| Q |
316 |
tgatgatttacataattgctttgattccttttatgcaaaatattatgctgtgtggaactggaacatg |
382 |
Q |
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| T |
7947222 |
tgatgatttacataattgcttttattccttttatgcaaaatattatgctgtgtggaactggaacatg |
7947288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 7946921 - 7946995
Alignment:
| Q |
13 |
tcatcatcaattatatcatccactcattatcattgcttatgatagtcttcttcatcacaactactaagtgataag |
87 |
Q |
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| T |
7946921 |
tcatcatcaattatatcatccactcattatcattgcttatgatactcttcttcatcacaactactaagtgataag |
7946995 |
T |
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