View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_25 (Length: 391)
Name: NF15178_low_25
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 44125070 - 44125427
Alignment:
| Q |
18 |
gaatctgctccggcaccggcgccagttccggcggctccaatctgccgcatctgtttaagcgaaccacggatttcatcaacagcatcgtcaagatttgaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125070 |
gaatctgctccggcaccggcgccagttccggcggctccaatctgccgcatctgtttaagcgaaccacggatttcatcaacagcatcgtcaagatttgaga |
44125169 |
T |
|
| Q |
118 |
aacagtcatggagagcgagtgcggcgcgtgaactaccgctgtaatctgcttcgcgagtgagattggagagataagaggcagttcggtggactttggagaa |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125170 |
aacagtcatggagagcgagtgtggcgcgtgaactaccgctgtaatctgcttcgcgagtgagattggagagataagaggcagttcggtggactttggagaa |
44125269 |
T |
|
| Q |
218 |
gcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtcagggtagagtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44125270 |
gcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtcagggtagagtgtt |
44125369 |
T |
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| Q |
318 |
gcgttgcaacttgaacggatgaattcggcgtcgtcgttggtggtggtcacaggttctg |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44125370 |
gcgttgcaacttgaacggatgaattcggcgtcgtcgttggtggtggtcggaggttctg |
44125427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 50036936 - 50037272
Alignment:
| Q |
18 |
gaatctgctccggcaccggcgccagttccggcggctccaatctgccgcatctgtttaagcgaaccacggatttcatcaacagcatcgtcaagatttgaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50036936 |
gaatctgctccggcaccggcgccagttccggcggctccaatctgccgcatctgtttaagcgaaccacggatttcatcaacagcatcgtcaagatttgaga |
50037035 |
T |
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| Q |
118 |
aacagtcatggagagcgagtgcggcgcgtgaactaccgctgtaatctgcttcgcgagtgagattggagagataagaggcagttcggtggactttggagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50037036 |
aacagtcatggagagcgagtgcggcgcgtgaactaccgctgtaatctgcttcgcgagtgagattggagagataagaggcagttcggtggactttggagaa |
50037135 |
T |
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| Q |
218 |
gcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtcagggtagagtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50037136 |
gcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtcagggtagagtgtt |
50037235 |
T |
|
| Q |
318 |
gcgttgcaacttgaacggatgaattcggcgtcgtcgt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50037236 |
gcgttgcaacttgaacggatgaattcggcgtcgtcgt |
50037272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 50044158 - 50044494
Alignment:
| Q |
18 |
gaatctgctccggcaccggcgccagttccggcggctccaatctgccgcatctgtttaagcgaaccacggatttcatcaacagcatcgtcaagatttgaga |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044158 |
gaatctgctccggcaccggcgccagttccggcggctccaatctgccgcatctgtttaagcgaaccacggatttcatcaacagcatcgtcaagatttgaga |
50044257 |
T |
|
| Q |
118 |
aacagtcatggagagcgagtgcggcgcgtgaactaccgctgtaatctgcttcgcgagtgagattggagagataagaggcagttcggtggactttggagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044258 |
aacagtcatggagagcgagtgcggcgcgtgaactaccgctgtaatctgcttcgcgagtgagattggagagataagaggcagttcggtggactttggagaa |
50044357 |
T |
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| Q |
218 |
gcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtcagggtagagtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044358 |
gcttacggctatggcgatgcgagcgagttggccaggattctgttgaactgcattggcgtaacgagagagggaagtgtagcatatgtcagggtagagtgtt |
50044457 |
T |
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| Q |
318 |
gcgttgcaacttgaacggatgaattcggcgtcgtcgt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
50044458 |
gcgttgcaacttgaacggatgaattcggcgtcgtcgt |
50044494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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