View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_26 (Length: 386)
Name: NF15178_low_26
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_26 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 86 - 386
Target Start/End: Original strand, 43953277 - 43953576
Alignment:
| Q |
86 |
gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacattcatggttactcttgcacatgttgaaaccttgattaagttaagcatt |
185 |
Q |
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| T |
43953277 |
gtcaaataagacaacaaaatttctccgaggagcagcataataatggaggacactcatggttactcatgcacatgttgaaaccttgattaagttaagcatt |
43953376 |
T |
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| Q |
186 |
ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt |
285 |
Q |
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| T |
43953377 |
ggtgagttcattgtctacaaaatcataatagctggaagaagcgaacttttcaaggttccaagggaataaatcgttagatggacgaaacttgaaagggtgt |
43953476 |
T |
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| Q |
286 |
tcgtatgagtatcataaatcagaggagaggctagctagtgtaataattcattcaaaaatat--tgagttaacatgaattgatcactaataaaatcatcat |
383 |
Q |
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| T |
43953477 |
tcgtatgagtatcataaatcagaggagaggctagctagtg---taattcattcaaaaatattgtgagttaacatgaattgatcactaataaaatcatcat |
43953573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 43953156 - 43953234
Alignment:
| Q |
8 |
tcgaagaaaatgtaacaaatgtttatttggcggtgtcacaatcattgatgttgcatcccatggcatagaaataaattag |
86 |
Q |
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| T |
43953156 |
tcgaacaaaatgtaacaaatgtttatttggcggtgtcacaatcattgatgttgcatcccatggcatagaaataaattag |
43953234 |
T |
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