View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_27 (Length: 379)
Name: NF15178_low_27
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 26102526 - 26102887
Alignment:
| Q |
1 |
aattcgttatcacataactgcattataaaatccacgactagactgaaagctattattacataattcatgtctataaaatttgatattaatcagataccat |
100 |
Q |
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| T |
26102526 |
aattcgttatcacataactgcattataaaatccacgactagattgaaagctattatcacataattcatgtctataaaatttgacattaatcggataccat |
26102625 |
T |
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| Q |
101 |
ttgatatattaataagatacataaaaatttgtgtgtttgatagcagttcataggacgttaattttgatagaactcgttggcatataaaataatatctgat |
200 |
Q |
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| T |
26102626 |
ttgatatattaacaagatacataaaaatttgtg--tttgatagcagtttataggatgttaattttgatagaactcgttggcatataaaataatatatgat |
26102723 |
T |
|
| Q |
201 |
tatcgtcaaaatttgtagacataattcaaattcacattggccacaaactctgtatatagggtatggttcccaatatacagaacaaaccgcatgcatgatg |
300 |
Q |
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| T |
26102724 |
tatcgtcaaaatttgtagacataattcaaattgacattggccacaaactctgtatataggttatggtctgcaatatacagaacaaaccgcatgcatgttg |
26102823 |
T |
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| Q |
301 |
ccttttctctcattctgaagagtagtgtataagacttttgaatttagattaagaaaaccacagg |
364 |
Q |
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| T |
26102824 |
ccttttctctcattctgaagagtagtgtataggacttttgaatttagattaagaaaaccacagg |
26102887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 43263802 - 43263879
Alignment:
| Q |
145 |
agttcataggacgttaattttgatagaactcgttggcatataaaataatatctgattatcgtcaaaatttgtagacat |
222 |
Q |
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| T |
43263802 |
agttcataagacgttaattttgatttatctcattgccatatcaaataatatatgattaatgtcatattttgtagacat |
43263879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 19527023 - 19527190
Alignment:
| Q |
1 |
aattcgttatcacataactgcattataaaatccacgactagactgaaagctattattacataattcatgtctataaaatttgatattaatcagataccat |
100 |
Q |
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||||| ||| ||||||| ||||||| ||||||||| | || ||||||||||||| ||||| ||||||| | ||||||||| ||||||||||||| || |
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| T |
19527023 |
aattctttaccacataattgcattacaaaatccaccgttggattgaaagctattatcacatagatcatgtcaacaaaatttgacattaatcagatacaat |
19527122 |
T |
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| Q |
101 |
ttgatatattaataagatacataaaaatttgtgtgtttgatagcagttcataggacgttaattttgat |
168 |
Q |
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| T |
19527123 |
atgatatgttaacgacatacataaaaattaacgcgcttgataaaagttcataaaacgttaattttgat |
19527190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1682576 - 1682681
Alignment:
| Q |
1 |
aattcgttatcacataactgcattataaaatccacgactagactgaaagctattattacataattcatgtctataaaatttgatattaatcagataccat |
100 |
Q |
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||||| ||||||||||| ||||||| ||||| ||| | || ||||||||||||| ||||| ||||||||| ||||||| || ||||| |||||||| |
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| T |
1682576 |
aattctttatcacataattgcatta-aaaattcaccgtttgattgaaagctattatcacatagatcatgtctacaaaatttaatgttaattggataccat |
1682674 |
T |
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| Q |
101 |
ttgatat |
107 |
Q |
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||||||| |
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| T |
1682675 |
ttgatat |
1682681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 1682812 - 1682750
Alignment:
| Q |
50 |
ctattattacataattcatgtctataaaatttgatattaatcagataccatttgatatattaa |
112 |
Q |
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| T |
1682812 |
ctattattaaataaatcatgcttacaaaatttgatgttgatcagatatcatttgatatattaa |
1682750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 34835284 - 34835345
Alignment:
| Q |
44 |
tgaaagctattattacataattcatgtctataaaatttgatattaatcagataccatttgat |
105 |
Q |
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|||||||||| || ||||| || ||| |||||||||||||||||||| |||| |||||||| |
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| T |
34835284 |
tgaaagctatcatcacatagatcttgtttataaaatttgatattaatcggatatcatttgat |
34835345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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