View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_28 (Length: 379)
Name: NF15178_low_28
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 29613658 - 29613311
Alignment:
| Q |
13 |
atacttcacatcaatttgataaaaaccctaacatactttctccagttaaataccaaattgaacctataccaaaattaccgttggaacaaaaaaccaatat |
112 |
Q |
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| T |
29613658 |
atacttcacatcaatttgataaaaaccctaacatactttctccaattaaataccaaattgaacctataccaaaattaccgttggaacaaaaaaccaatat |
29613559 |
T |
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| Q |
113 |
ttcacacatagtgtttggaataggagcctcatcaaaattatggaaccatagaaaagaatatattaaattatggtggaagcctaatataacaagaggaaat |
212 |
Q |
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| T |
29613558 |
ttcacacatagtgtttggaataggagcctcatcaaaattatggaaccatagaaaagaatatattaaattatggtggaagcctaatataacaagaggaaat |
29613459 |
T |
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| Q |
213 |
gtatggttagacaaagaagtgaaaattaaacctagtgatgagaaacttcttccaacattgaagatatctagtgacacatcaaaattcaagtacaaacatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29613458 |
gtatggttagacaaagaagtgaaaattaaacctagtgatgagaaacttcttccaacattgaaaatatctagtgacacatcaaaattcaagtacaaacatc |
29613359 |
T |
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| Q |
313 |
cacatgggataaggtcagggattaggatatctaggattgtgtcggaga |
360 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29613358 |
cacttgggataaggtcagggattaggatatctaggattgtgtcggaga |
29613311 |
T |
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