View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_low_3 (Length: 830)
Name: NF15178_low_3
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_3 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 295 - 811
Target Start/End: Complemental strand, 42125969 - 42125458
Alignment:
| Q |
295 |
gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaacatacttatgctatcacggagaatatagattagagttggtcggataattac |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
42125969 |
gttaatttgaatgaagataatatttgaggaacatataaagtaataaaaatatacttatgctatcacggagaatatagattagaattgatcggataattac |
42125870 |
T |
|
| Q |
395 |
agatgggacaatccagtctcatcctaatttttcttaacccagatgagacattctatttgtgttnnnnnnnnnnnnnnnngtattttttatattataaaaa |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
42125869 |
agatgggacaatccagtctcatcctaatttttcttaactcagatgagacattctatttgtgttaaataaaaaaataaaaaaatt----atattataaaaa |
42125774 |
T |
|
| Q |
495 |
tgccgtattcatagagtatacaattcatggtttaagcggaacttccttnnnnnnnn-tggtttaagcgtaactaattaaaacctagattactaaaatata |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
42125773 |
tgccgtattcatagagtatacaattcatggtttaagcggaacttccttaaaaaaaaatggtttaagcggaactaattaaaacctagattactaaa-tata |
42125675 |
T |
|
| Q |
594 |
tacatgattataggatatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatcc |
693 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125674 |
tacatgattatag-atatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatcc |
42125576 |
T |
|
| Q |
694 |
atataagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgtaagtttactacaaagaatatgttagtaaaaaat |
793 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125575 |
atataagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgtaagtttactacaaagaatatgttagtaaaaaat |
42125476 |
T |
|
| Q |
794 |
gtagaaattataccactt |
811 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42125475 |
gtagaaattataccactt |
42125458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 42126260 - 42126019
Alignment:
| Q |
1 |
taaatcagctattttataattaaatagttatgaaagagtgatcaaaagcaaagcagagaaagccccacgacaatagcatgaaagattagtttgaacggag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| | | |||| |||||| |||||||||||||||||||| |
|
|
| T |
42126260 |
taaatcagctattttataattaaagagttatgaaagagtgatgaaaagaaaatgagagaaattcacgtgacattagcattaaagattagtttgaacggag |
42126161 |
T |
|
| Q |
101 |
gaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtatgtatgtatgaagaggttttttagagtgccacatgggcacaatctaagca |
200 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42126160 |
gagttttggtgagatgacacataagaaaattgcaccttaaaatacatgtatgtatg----aagaggttttttagagtgccacataggcacaatctaagca |
42126065 |
T |
|
| Q |
201 |
taaggttaactcaagtttaaaagtcaacatagtattctaattttaa |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42126064 |
taaggttaactcaagtttaaaagtcaacatagtattctaattttaa |
42126019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 46225 - 46075
Alignment:
| Q |
1 |
taaatcagctattttataattaaatagttatgaaagagtgatcaaaagcaaagcagagaaagccccacgacaatagcatgaaagattagtttgaacggag |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| |||||||||| || | || ||| ||||||| ||| || | | || | |
|
|
| T |
46225 |
taaatcagccattttataattaaagagttatgaaagagtgattaaaagaaaaggagagaaagccacatggcattagtatgaaagtttatttaggaagggg |
46126 |
T |
|
| Q |
101 |
gaattttggtgggatgacacataagaaaattgcaccttaaaatacatgtat |
151 |
Q |
| |
|
|| |||||||| | ||| | ||||| ||| || | |||| ||||||||||| |
|
|
| T |
46125 |
gagttttggtgaggtgatatataagcaaaatgtagcttagaatacatgtat |
46075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 668 - 709
Target Start/End: Original strand, 10172667 - 10172708
Alignment:
| Q |
668 |
aagaattaagaaataaaatcatatccatataagagaataaac |
709 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10172667 |
aagaattaagaaataacatcatatccatataagagaataaac |
10172708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 3738475 - 3738599
Alignment:
| Q |
26 |
agttatgaaagagtgatcaaaagcaaagcagagaaagccccacgacaatagcatgaaagattagtttgaacggaggaattttggtgggatgacacataag |
125 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||| || | || |||||||||| ||| ||| ||| || || |||||||| | ||||||||||| |
|
|
| T |
3738475 |
agttatgaaagagtgattaaaagaaaag-agagaaagccacatggcattagcatgaaaaattggttagaaagggagagttttggtgaggtgacacataag |
3738573 |
T |
|
| Q |
126 |
aaaattgcaccttaaaatacatgtat |
151 |
Q |
| |
|
||| || | || | ||||||||||| |
|
|
| T |
3738574 |
caaagtgtagctcagaatacatgtat |
3738599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 40971032 - 40970955
Alignment:
| Q |
14 |
ttataattaaatagttatgaaagagtgatcaaaagcaaagcagagaaagccccacgacaatagcatgaaagattagtt |
91 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |||| |||||||||| || | || ||| ||||||| |||||| |
|
|
| T |
40971032 |
ttataattgaagagttatgaaagagtgattaaaagaaaaggagagaaagccacatggcattagtatgaaagtttagtt |
40970955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 14828313 - 14828371
Alignment:
| Q |
719 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga |
776 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
14828313 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaaga |
14828371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40971090 - 40971033
Alignment:
| Q |
1 |
taaatcagctattttataattaaatagttatgaaagagtgatcaaaagcaaagcagag |
58 |
Q |
| |
|
||||||| | ||||||||||| || ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
40971090 |
taaatcaaccattttataattgaagagttatgaaagagtgattaaaagaaaaggagag |
40971033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 776
Target Start/End: Original strand, 25124 - 25182
Alignment:
| Q |
719 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga |
776 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
25124 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaaga |
25182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 776
Target Start/End: Complemental strand, 11396 - 11338
Alignment:
| Q |
719 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga |
776 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
11396 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaaga |
11338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University