View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_30 (Length: 373)
Name: NF15178_low_30
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 41036160 - 41036494
Alignment:
| Q |
19 |
gtgccagcaatagattaaatcataatattaagggtaattgtaagattctagggaatattactcatgctgctgtgtcagtctattgtagattgctttctcg |
118 |
Q |
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| T |
41036160 |
gtgccagcaatagattaaatcataatattaagggtaattgtaagattctagggaatattactcatgctgctgtgtcagtctattgtagattgctttctcg |
41036259 |
T |
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| Q |
119 |
atcagtctgataaggtccacatggctcgtcatgatttctattgtttcgtggtttctttttgcggcagatcactgtccaatatgtgtaaggatcaaagcag |
218 |
Q |
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| T |
41036260 |
----gtctgataaggtccacatggctcgtcatgatttctattgtttcgtggtttctttttgcggtagatcactgtccaatatgtgtaaggatcaaagcag |
41036355 |
T |
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| Q |
219 |
tattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagtgagtgtagaagtgaaactaaacatataggctatcatacatcaatt |
318 |
Q |
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| T |
41036356 |
tattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagcgagtgtagatgtgaaactaaacatataggctatcatacatcaatt |
41036455 |
T |
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| Q |
319 |
tctcctttgattaattactggcttttatatgtgcaagct |
357 |
Q |
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| T |
41036456 |
tctcctttgattaattactggcttttatatgtgcaagct |
41036494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 41030621 - 41030863
Alignment:
| Q |
73 |
atattactcatgctgctgtgtcagtctattgtagattgctttctcgatcagtctgataaggtccacatggctcgtcatgatttctattgtttcgtggtt- |
171 |
Q |
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| T |
41030621 |
atatcactcatgctgctgtgtcagtctaccataggttgctttctcgatc----tgataaggtccatgtggctcgtcacgatttctaatgctgcgtagttg |
41030716 |
T |
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| Q |
172 |
--tctttttgcggcagatcactgtccaatatgtgtaaggatcaaagcagtattttatagtttctgttaaatcacagtcgattggcatatgaatgcaagaa |
269 |
Q |
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| T |
41030717 |
tttgtttttgtggtggatcagtttccgatacgcataaggatcaaagctatagtttgtagtttctattaaatcactgttgattggcatatgaacgcgagta |
41030816 |
T |
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| Q |
270 |
tagtgagtgtaga---agtgaaactaaacatataggctatcatacat |
313 |
Q |
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| T |
41030817 |
tagtgagtgtggaactagtgaaatcaaacatagaggctatcatacat |
41030863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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