View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_31 (Length: 360)
Name: NF15178_low_31
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 209 - 359
Target Start/End: Original strand, 17096193 - 17096342
Alignment:
| Q |
209 |
ctaatacacatattaaattctaagcttctacaatggagttcacttatctttctattttcgctttattttgtgtacgctattttgttcttcgctttatcac |
308 |
Q |
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| T |
17096193 |
ctaatacacatattaaattctaagcttctacaatggagttcacttaa-tttctattttcgctgtattttgtgtaagctattttgttcttcgcttgatcac |
17096291 |
T |
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| Q |
309 |
taaatacatgattgagtgtctcaacataatataatttcatgcatttttcct |
359 |
Q |
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| T |
17096292 |
taaatacatgattgagtgtctcaacataatataatttcatgcatttttcct |
17096342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 17095695 - 17095837
Alignment:
| Q |
61 |
aaatataaccaaaatgaataagtgaagatacttattaaaaagtaaaataatgaaatttaattttggaaatcatgtatcgaacagtttaaaactttaaaaa |
160 |
Q |
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| T |
17095695 |
aaatataaccaaaatgaataagtgaagata--tattaagaagtaaaataatgaaatttaattttggaaatcatgtatcgaacagtttaaaactttaaaaa |
17095792 |
T |
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| Q |
161 |
ttgacttttggtttggtttcgtttcaagtatgttttattcatttt |
205 |
Q |
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| T |
17095793 |
ttgacttttggtttggtttccattcaagtatgttttgttcatttt |
17095837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 212 - 359
Target Start/End: Original strand, 17098238 - 17098386
Alignment:
| Q |
212 |
atacacatattaaattctaagcttctacaatggagttcacttatctttctattttcgctttatttt-gtgtacgctattttgttcttcgctttatcacta |
310 |
Q |
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| T |
17098238 |
atacacatattaagttctaagcttctacaatggagttcactcatctttctattttcgctgtatttttgtgtaagctattttgttcttcgcttgatcacta |
17098337 |
T |
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| Q |
311 |
aatacatgattgagtgtctcaacataatataatttcatgcatttttcct |
359 |
Q |
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| T |
17098338 |
gatacatgattgaatgtctcaacataatataatttcatgtatttttcct |
17098386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 212 - 354
Target Start/End: Original strand, 17105463 - 17105604
Alignment:
| Q |
212 |
atacacatattaaattctaagcttctacaatggagttcacttatctttctattttcgctttattttgtgtacgctattttgttcttcgctttatcactaa |
311 |
Q |
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| T |
17105463 |
atacacatattaagttctgagcttctacaatggagttaacttatctctctgttttcgctgtattttgtgtaagttattttgttcttcgcttgatcact-a |
17105561 |
T |
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| Q |
312 |
atacatgattgagtgtctcaacataatataatttcatgcattt |
354 |
Q |
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| T |
17105562 |
gtacatgattgaatgtctcaacataatataatttcatgcattt |
17105604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 359
Target Start/End: Original strand, 17102892 - 17103025
Alignment:
| Q |
212 |
atacacatattaaattctaagcttctacaatggagttcacttatctttctattttcgctttattttgtgtacgctattttgttcttcgctttatcactaa |
311 |
Q |
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| T |
17102892 |
atacacatattaagttctaagcttctacaatggagttcactcatcttttaattttcgctgtatt--------------ttgttcttcgcttgatcactag |
17102977 |
T |
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| Q |
312 |
atacatgattgagtgtctcaacataatataatttcatgcatttttcct |
359 |
Q |
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| T |
17102978 |
atacatgattgaatgtctcaacataatataatttcatgtatttttcct |
17103025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 17095506 - 17095567
Alignment:
| Q |
16 |
caatatagagttagcataagttaactaggttgcttatgcataactaaatataaccaaaatga |
77 |
Q |
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| T |
17095506 |
caatatagagttagcttaagttaactaggtgacttatgcataactaaatataaccaaaatga |
17095567 |
T |
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