View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_35 (Length: 328)
Name: NF15178_low_35
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 42225691 - 42226014
Alignment:
| Q |
1 |
tggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaagaactaagaatattaagaaa |
100 |
Q |
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| T |
42225691 |
tggggacaagaacaagaagcccgagatgatatttcctgaagttatgaaaattgtgaagaaaaagatccataagattctaagaactaagaatattaagaaa |
42225790 |
T |
|
| Q |
101 |
ttatatatgtatacatat----atacacataaattagtagtgtaacaactagaaagtaagagacttgagtaccgacctataacaccaataattgttcgag |
196 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42225791 |
ttatatatgtatacatatatatatacacataaattagtagtgtaacaactagcaagtaagagacttgagtaccgacctataacaccaataattgttcgag |
42225890 |
T |
|
| Q |
197 |
caatatgtgctgctgctgcggtcatgatatctccaagctctaaaataaaatgattataagggatgaggtatgaaatgaatgaaatataatgcaagaaaga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42225891 |
caatatgtgctgctgctgcggtcatgatatctccaagctctaaaataaaatgattataagggatgaggtatgaaatgaatgaaatataatgcaagaaaga |
42225990 |
T |
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| Q |
297 |
ggaatcgtgaagaatatatataaa |
320 |
Q |
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|||||||||||||||||||||||| |
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| T |
42225991 |
ggaatcgtgaagaatatatataaa |
42226014 |
T |
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