View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_36 (Length: 325)
Name: NF15178_low_36
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 29293643 - 29293935
Alignment:
| Q |
18 |
tcttagacataagatatcaagatataccggcattagaactgcaactggtgttagagtttctagagcttcttcttgtaacttctgcttttcatgctgcaaa |
117 |
Q |
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| T |
29293643 |
tcttagacataagatatcaagatataccggcattagaactgcaactggttttagagtttctagagcttcttcttgtaacttctgcttttcatgctgcaaa |
29293742 |
T |
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| Q |
118 |
ctcagaaaacccattattcagcttattgcaagtacataaaatgttaaaccatacaaaaataaaggggcgagactgcacaaattaatatggtgtggaaata |
217 |
Q |
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| T |
29293743 |
ctcagaaa-cccattattcagcttattgcaagtacataaaattttaaaccatacaaaaataaaggggtgagactgcacaaattaatatggtgtggaaata |
29293841 |
T |
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| Q |
218 |
tttagcaactagcaacaatcataaagattacaaatgtttgcaatgattgtatatagaagcagtgtgtaaatgaatagttgatatagtgaaaatt |
311 |
Q |
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| T |
29293842 |
tttagcaactagcaacaatcataaagattacaaatgtttgcaatgattgtatatagaagcagtgtgtaaatgaatagttgatatagtgaaaatt |
29293935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 29302295 - 29302336
Alignment:
| Q |
91 |
tgtaacttctgcttttcatgctgcaaactcagaaaacccatt |
132 |
Q |
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| T |
29302295 |
tgtatcttctgcttttcatgctgaaaactcagaaaaaccatt |
29302336 |
T |
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