View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_39 (Length: 302)
Name: NF15178_low_39
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 38 - 287
Target Start/End: Complemental strand, 54198412 - 54198163
Alignment:
| Q |
38 |
gataacaagacaaataagtgagcatataatagtgaaaatttaagccggccctttggaagatttgcttgtatatggtttttatcgttttatacttgtacat |
137 |
Q |
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| T |
54198412 |
gataacaagacaaataagtgagcatataatagtgaaaatttaagccggccctttggaagatttgcttgtatatggtttttatcgttttatacttgtacat |
54198313 |
T |
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| Q |
138 |
ggtttgtgcattattattagttttttaagaaacacaatttatatgatacaattgnnnnnnngactaattatatcatacaatttttgttacataattcttg |
237 |
Q |
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| T |
54198312 |
ggtttgtgcattattattagttttttaagaaacacaatttatatgatacaattgtttttttgactaattatatcatacaatttttgttacataattcttg |
54198213 |
T |
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| Q |
238 |
gtcccatgacaacttatatgtatactatagcaaaattttataaattaatt |
287 |
Q |
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| T |
54198212 |
gtcccatgacaacttatatgtatactatagcaaaattttataaattaatt |
54198163 |
T |
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