View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_4 (Length: 774)
Name: NF15178_low_4
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 19 - 769
Target Start/End: Original strand, 19136420 - 19137167
Alignment:
| Q |
19 |
cattagaactatatgctaatgctaatagtatcaaggagaagaatgaaactgaaattgctaatttagccatttgttaataaaaattgaatgatttttaggt |
118 |
Q |
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| T |
19136420 |
cattagaactatatgctaatgctaatagtatcaaagagaagaatgaaactgaaattgctaatttagccatttgttaataaaaattgaatgatttttaggt |
19136519 |
T |
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| Q |
119 |
tgtagaactatggtgttagaggaagctatttataaagggtgacaattaacataaaatgtctctaatccttaacagtttgtttgtgactttttcttatact |
218 |
Q |
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| T |
19136520 |
tgtagaactatggtgttagaggaagctatttataaagggtgacaattaacataacatgtctctaatccttaacagtttgtttgtgactttttcttatact |
19136619 |
T |
|
| Q |
219 |
tagtccaaaattgcaatcatagatagatattgataaatattaaggaagcaacgtacaaatttgtcaacatctactgcatgtaattttcttctcgtccact |
318 |
Q |
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| T |
19136620 |
tagtccaaaattgcaatcatagata----ttgataaatattaaggaagcaacgtacaaattagtcaacatctactgcatgtaattttcttctcgtccact |
19136715 |
T |
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| Q |
319 |
catgctaatacagtcagcatatcagtcaagtacaacaagcaccatacaaannnnnnnatgttcttcttttcagtggagttaaaatgtaattaaagatgaa |
418 |
Q |
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| T |
19136716 |
catgctaatacagtcagcatatcagtcaagtacaacaagcaccatacaaatttttttatgttctttttttcagtggagttacaatgtaattaaagatgaa |
19136815 |
T |
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| Q |
419 |
atgggtcattggttttattatgaatctatcaatttctattctttttatgctttgatacttattggattctcttcccccacttgccctgcgtttgaacttt |
518 |
Q |
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| T |
19136816 |
atgggtcattggttttattatgaatctatcaatttctattctttttatgctttgatacttattggattctcttcccccacttgcactgcgtttgaacttt |
19136915 |
T |
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| Q |
519 |
gaaataaaaaatatgccaacataaaaaggcacatttggtttgagttttgttttttaattataataatagtactccatttttgttcctattttaatataaa |
618 |
Q |
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| T |
19136916 |
gaaataaaaaatatgccaatataaaaaggcatatttggtttgagttttgttttttaattataataatagtacttcatttttgttcctattttaatataaa |
19137015 |
T |
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| Q |
619 |
ttattaaaaataaaagataatttattcttgtttgttgtttttcagtaaattcttcaccgaaggtaatcttacttgaaactctt-gatattaaatgtaggc |
717 |
Q |
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| T |
19137016 |
ttattaaaaataaaagataatttatttttgtttgttgtttttcaataaattcttcaccgaaggtaatcctacttaaaactcttggatattaaatgtaggc |
19137115 |
T |
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| Q |
718 |
aagtcttctagactctagcaggattcgaactttgattcactatattcttcga |
769 |
Q |
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| T |
19137116 |
aagtcttctaggctctagcaggattcgaactttgattcactatattgttcga |
19137167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 455845 - 455916
Alignment:
| Q |
19 |
cattagaactatatgctaatgctaatagtatcaaggagaagaatgaaactgaaattgctaatttagccattt |
90 |
Q |
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| T |
455845 |
cattagaaccatatgctaatgctaatagtttcaaggagaagaatgaaactgaaatcgctaatttagccattt |
455916 |
T |
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