View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_47 (Length: 276)
Name: NF15178_low_47
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 15422587 - 15422836
Alignment:
| Q |
17 |
acatgtgaggattggccaaaaatatctcacattcaaaatcttacatgtatgtttttgatctcttgctctttcttatcatattgtacatctttcattttag |
116 |
Q |
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| T |
15422587 |
acatgtgaggattggccaaaaatatctcacattcaaaatcttacatgtatgtttttgatctcttgctctttcttatcatattgtacatctttcattttag |
15422686 |
T |
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| Q |
117 |
attttttctaccaacacccaaaaatatctagttacactcaaatgcttttaaaatttaatcataaaccaaagttatccttatttaaaattctacattattg |
216 |
Q |
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| T |
15422687 |
attttttctaccaacacccaaaaatatttagttacactcaaatgcgtttaaaatttaatcataaaccaaaattatccttatttaaaattctacgttactg |
15422786 |
T |
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| Q |
217 |
cataatgcctacctatctcagttagaacttagttcatatgttaatctctg |
266 |
Q |
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| T |
15422787 |
cgtaatgcctaccaatctcagttagaacttagttcatatgttaatctctg |
15422836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 15431135 - 15431193
Alignment:
| Q |
21 |
gtgaggattggccaaaaatatctcacattcaaaatcttacatgtatgtttttgatctct |
79 |
Q |
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| T |
15431135 |
gtgaggattggccaaaaatatctcacattcaatatcttcgaggtatgttttggatctct |
15431193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 15081871 - 15081815
Alignment:
| Q |
23 |
gaggattggccaaaaatatctcacattcaaaatcttacat-gtatgtttttgatctct |
79 |
Q |
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| T |
15081871 |
gaggattggccaaaaatatctcacattcaaaatctt-catggtatgttttggatctct |
15081815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 27324626 - 27324562
Alignment:
| Q |
133 |
cccaaaaatatctagttacactcaaatgcttttaaaatttaatcataa-accaaagttatcctta |
196 |
Q |
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| T |
27324626 |
cccaaaaatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatcctta |
27324562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 28359421 - 28359357
Alignment:
| Q |
133 |
cccaaaaatatctagttacactcaaatgcttttaaaatttaatcataa-accaaagttatcctta |
196 |
Q |
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|||||||||||| |||||||| ||||| | ||||||||||| |||||| | |||| ||||||||| |
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| T |
28359421 |
cccaaaaatatcaagttacacccaaattcatttaaaatttattcataatatcaaaattatcctta |
28359357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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