View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_50 (Length: 263)
Name: NF15178_low_50
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 44125925 - 44125840
Alignment:
| Q |
16 |
attgaaaaaccaaagctaaactaaatacttttttagctagacgaatataatagtcatcgaatattcacacatgtatggaagagctgag |
103 |
Q |
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| T |
44125925 |
attgaaaaaccaaagctaaactaaatacttttttagctagacga--ataatagtcatcgaatattcacacatgtatggaagagctgag |
44125840 |
T |
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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 44125816 - 44125740
Alignment:
| Q |
100 |
tgagccaacaattccgacattttttaataaggatctcgatatgcataagatgtgtttggtttggtatattatttgac |
176 |
Q |
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| T |
44125816 |
tgagccaacaattccgacattttttaataaggatcttgatatgcataagatgtgtttggtttggtatattatttgac |
44125740 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 50037771 - 50037689
Alignment:
| Q |
19 |
gaaaaaccaaagctaaactaaatacttttttagctagacgaatataatagtcatcgaatattcacacatgtatggaagagctgag |
103 |
Q |
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| T |
50037771 |
gaaaaaccaaagttaaactaaatacttttttagttagacga--ataatagtcatcgaatattcacacatgcatgaaagagctgag |
50037689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 50044993 - 50044911
Alignment:
| Q |
19 |
gaaaaaccaaagctaaactaaatacttttttagctagacgaatataatagtcatcgaatattcacacatgtatggaagagctgag |
103 |
Q |
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| T |
50044993 |
gaaaaaccaaagttaaactaaatacttttttagttagacga--ataatagtcatcgaatattcacacatgcatgaaagagctgag |
50044911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 50037665 - 50037606
Alignment:
| Q |
100 |
tgagccaacaattccgacattttttaataaggatctcgatatgcataagatgtgtttggt |
159 |
Q |
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| T |
50037665 |
tgagccaacaattccgacattttttaataaggatcttgatatgcataagatgtgtttggt |
50037606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 50044887 - 50044828
Alignment:
| Q |
100 |
tgagccaacaattccgacattttttaataaggatctcgatatgcataagatgtgtttggt |
159 |
Q |
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| T |
50044887 |
tgagccaacaattccgacattttttaataaggatcttgatatgcataagatgtgtttggt |
50044828 |
T |
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