View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_51 (Length: 260)
Name: NF15178_low_51
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38998506 - 38998266
Alignment:
| Q |
1 |
ttcatcacagtgagtaaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaa |
100 |
Q |
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| T |
38998506 |
ttcatcacagtgagtaaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaa |
38998407 |
T |
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| Q |
101 |
tcgcggattcccccttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctca |
200 |
Q |
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| T |
38998406 |
tcgcggattcccccttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctca |
38998307 |
T |
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| Q |
201 |
tcaaaattgtttgtaccttcttgaacttccgcaaaagtaac |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998306 |
tcaaaattgtttgtaccttcttgaacttccgcaaaagtaac |
38998266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 41048929 - 41049148
Alignment:
| Q |
15 |
taaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattccccc |
114 |
Q |
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| T |
41048929 |
taaccaatcaaggacaccaaatgacgatgacggaactgagacaacatttcaatttcagttctaaattcagcaatcccttgctgggaccgcggattccccc |
41049028 |
T |
|
| Q |
115 |
ttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgt |
214 |
Q |
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| T |
41049029 |
tcttcactgccacttttctaccatcccttaactctcccttgtatactttcccaaaaccaccaacccca---ataacccaactctcatcaaaattatttgt |
41049125 |
T |
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| Q |
215 |
accttcttgaacttccgcaaaag |
237 |
Q |
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||| || |||||||||||||||| |
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| T |
41049126 |
accctcctgaacttccgcaaaag |
41049148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 41041463 - 41041537
Alignment:
| Q |
22 |
tcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgca |
96 |
Q |
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||||||||||| ||| ||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
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| T |
41041463 |
tcaaagacacctgatgccgatggtggaactgagacaacatttcaatttcaactcgaaattcagcaatcccctgca |
41041537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 22901739 - 22901934
Alignment:
| Q |
39 |
cgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccactttcctgccat |
138 |
Q |
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|||||||||||||||||||||||||||||||||| || || || |||| ||||| || | || || |||||||| || || ||||| | |||| |
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| T |
22901739 |
cgatgacggaactgagacaacatttcaatttcagttcggaactctgcaagtccctgatgcgaccgagggttccccctcttacaagcaactttagttccat |
22901838 |
T |
|
| Q |
139 |
cccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaag |
237 |
Q |
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| T |
22901839 |
cgcttaattcacctttgtataccttaccaaaaccacctacgccga---taacccaactctcatcaaaattgtttgttgcctcctgaactaccgcaaaag |
22901934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 22953407 - 22953602
Alignment:
| Q |
39 |
cgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccactttcctgccat |
138 |
Q |
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|||||||||||||||||||||||||||||||||| || || || |||| ||||| || | || || |||||||| || || ||||| | |||| |
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| T |
22953407 |
cgatgacggaactgagacaacatttcaatttcagttcggaactctgcaagtccctgatgcgaccgagggttccccctcttacaagcaactttagttccat |
22953506 |
T |
|
| Q |
139 |
cccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaag |
237 |
Q |
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| T |
22953507 |
cgcttaattcacctttgtataccttaccaaaaccacctacgccga---taacccaactctcatcaaaattgtttgttgcctcctgaactaccgcaaaag |
22953602 |
T |
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