View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_52 (Length: 257)
Name: NF15178_low_52
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_52 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 22766896 - 22766642
Alignment:
| Q |
3 |
cacagagcaattgaaagtgctaaatagcacattcaaagattataggctgataactgcagaaggtggaaggcatattatcaagtgcaagaagatttttagc |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22766896 |
cacaaagcaattgaaagtgctaaatagcacattcaaagattataggctgataactgcagaaggtggaaggcatattatcaagtgcaagaagatttttagc |
22766797 |
T |
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| Q |
103 |
gaagagctcgtaactatcatgattttaaccattccagaaaaccagaaaaacaatggatttccacacagtatcttaaatcgcgtctctatgctcaaaaact |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22766796 |
gaagagctcgtaactatcatgattttaaccattccagaaaaccagaaaaacaatggatttccacagagtatcttaaatcgcgtctctatgctcaaaaact |
22766697 |
T |
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| Q |
203 |
tgaacctccccaatattgtcgggtcaatctttttccttctttccttccttcatct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22766696 |
tgaacctccccaatattgtcgggtcaatctttttccttctttccttccttcatct |
22766642 |
T |
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