View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_low_6 (Length: 648)
Name: NF15178_low_6
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_6 |
 | |
|
| [»] scaffold0014 (6 HSPs) |
| | |
|
| [»] scaffold1270 (3 HSPs) |
| | |
|
| [»] scaffold1635 (2 HSPs) |
| | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 162069 - 161653
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
162069 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
161971 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
161970 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
161871 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
161870 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
161771 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
161770 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
161671 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
161670 |
gaaaaagggtgatttatt |
161653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 176215 - 175799
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
176215 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
176117 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
176116 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
176017 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
176016 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
175917 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175916 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
175817 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
175816 |
gaaaaagggtgatttatt |
175799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 171371 - 170955
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
171371 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
171273 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
171272 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
171173 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
171172 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
171073 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
171072 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
170973 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
170972 |
gaaaaatggtgatttatt |
170955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 162084 - 162037
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
162084 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
162037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 171386 - 171339
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
171386 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
171339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 176230 - 176183
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
176230 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
176183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 48511019 - 48511435
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
48511019 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
48511117 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48511118 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
48511217 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48511218 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
48511317 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48511318 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
48511417 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48511418 |
gaaaaagggtgatttatt |
48511435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 48725461 - 48725877
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
48725461 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
48725559 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48725560 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
48725659 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48725660 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
48725759 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48725760 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
48725859 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48725860 |
gaaaaagggtgatttatt |
48725877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 42107853 - 42107439
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
42107853 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgggtttacagtaaaggttgttgagac |
42107755 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagat-aagggaattttacctcatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42107754 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttcttagatggaaacaagtcaagataaagggaattttacctcatt |
42107655 |
T |
|
| Q |
200 |
aaacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42107654 |
aaacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaa |
42107555 |
T |
|
| Q |
300 |
tgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagta |
399 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42107554 |
tgaaaatcaaacttatgagagtta---ggtctcaaaaagggaaaacatgcatagccaaagcttttaaggaatttatagtctggaaattgaaggtgaagta |
42107458 |
T |
|
| Q |
400 |
agaaaaagggtgatttatt |
418 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42107457 |
agaaaaagggtgatttatt |
42107439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 3715872 - 3716299
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
3715872 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
3715970 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaa-----------acagaacacactttctgagatggaaacaagtcaagataagggaatt |
189 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
3715971 |
aggagtgagaagaaaagtggataaagtgggaccatctggtaaaacactggtaaaacagaacacactttctgatatggaaataagtcaagataagggaatt |
3716070 |
T |
|
| Q |
190 |
ttacctcattaaacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacaca |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3716071 |
ttacctcattaaacacaacatctttggatataaaagttctacctgaagcatctaaacatttatatcatttgtgactgttggaatatcccaagaaaacaca |
3716170 |
T |
|
| Q |
290 |
ctcatttgaatgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattga |
389 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3716171 |
ctcttttgaatgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacatccaaagcttttaaggaatttatagtatggaaattga |
3716270 |
T |
|
| Q |
390 |
aggtgaagtaagaaaaagggtgatttatt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3716271 |
aggtgaagtaagaaaaagggtgatttatt |
3716299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 3715857 - 3715904
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
3715857 |
aggaacagactcagaatgagaagtttggggagtaggtgagttaacaat |
3715904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 42107868 - 42107821
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
42107868 |
aggaacagactcagaatgagaagtttggggagtaggtgagttaacaat |
42107821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 390
Target Start/End: Original strand, 25229670 - 25229772
Alignment:
| Q |
288 |
cactcatttgaatgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaatt |
387 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||| |||||| |||||||| || || || || |||| |||||||| ||| ||||||||||| || ||||||| |
|
|
| T |
25229670 |
cactcttttgagtgaaaatcaaccttttgactgttataaggtctcaagaaagggaagcaggcacaaccaaagcatttgaggaatttataatcaggaaatt |
25229769 |
T |
|
| Q |
388 |
gaa |
390 |
Q |
| |
|
||| |
|
|
| T |
25229770 |
gaa |
25229772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 48511004 - 48511051
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
48511004 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
48511051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 48725446 - 48725493
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
48725446 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
48725493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 36676550 - 36676966
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36676550 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
36676648 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36676649 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
36676748 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36676749 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
36676848 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36676849 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
36676948 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36676949 |
gaaaaagggtgatttatt |
36676966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 36665225 - 36664809
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36665225 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
36665127 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36665126 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
36665027 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
36665026 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttagaatattccaagaaaacacactcctttgaat |
36664927 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36664926 |
gaaaatcaaacttatgagagttatagggtctcaaaaaggaaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
36664827 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
36664826 |
gaaaaatggtgatttatt |
36664809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 66 - 418
Target Start/End: Complemental strand, 43562680 - 43562324
Alignment:
| Q |
66 |
ggagtaggtgagtttacaataaaggttg----ttgagacaggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctga |
161 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
43562680 |
ggagtaggtgagttaacagtaaaggttggttgttgagacaggagtgggaagaaaagtcgataaagtggggccatctggtaaaacataacacactttctga |
43562581 |
T |
|
| Q |
162 |
gatggaaacaagtcaagataagggaattttacctcattaaacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||| ||||| |
|
|
| T |
43562580 |
tatggaaacaagtcaagataagggaattttacctcattaaacacaacatctttggatataaaaattctacctaaagcatttaaacatttatatcatttgt |
43562481 |
T |
|
| Q |
262 |
gactgttggaatatcccaagaaaacacactcatttgaatgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
43562480 |
gactgttggaatatcccaagaaaacacactcctttgaatgaaaatcaaacttatgagagttattgggtctcaaaaagggaaaacatgcacacccaaagct |
43562381 |
T |
|
| Q |
362 |
tttaaggaatttatagtctggaaattgaaggtgaagtaagaaaaagggtgatttatt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43562380 |
tttaaggaatttatagtctggaaattgaaggtgaagtaagaaaaagggtgatttatt |
43562324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 36665240 - 36665193
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
36665240 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
36665193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 36676535 - 36676582
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
36676535 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
36676582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 12507422 - 12507006
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
12507422 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
12507324 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12507323 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
12507224 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12507223 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
12507124 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507123 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
12507024 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12507023 |
gaaaaagggtgatttatt |
12507006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 14678504 - 14678920
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
14678504 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
14678602 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14678603 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
14678702 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14678703 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
14678802 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14678803 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
14678902 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14678903 |
gaaaaagggtgatttatt |
14678920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 159 - 418
Target Start/End: Complemental strand, 39589841 - 39589582
Alignment:
| Q |
159 |
tgagatggaaacaagtcaagataagggaattttacctcattaaacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctt |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39589841 |
tgagatggaaacaagtcaagataagagaattttacctcattaaacacaacatctttggatataaaaattctacctgaaacatctaaacatttatatcctt |
39589742 |
T |
|
| Q |
259 |
tgtgactgttggaatatcccaagaaaacacactcatttgaatgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaa |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39589741 |
tgtgactgttggaatatcccaagaaaacacactcctttgaataaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaa |
39589642 |
T |
|
| Q |
359 |
gcttttaaggaatttatagtctggaaattgaaggtgaagtaagaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39589641 |
gcttttaaggaatttatagtctggaaattgaaggtgaagtaagaaaaagggtgatttatt |
39589582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 12507437 - 12507390
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
12507437 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
12507390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 14678489 - 14678536
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
14678489 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
14678536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 29654476 - 29654060
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
29654476 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
29654378 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29654377 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
29654278 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29654277 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
29654178 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29654177 |
aaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
29654078 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29654077 |
gaaaaagggtgatttatt |
29654060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 38325278 - 38325694
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
38325278 |
atgagaagtttgggg-agtaggtgagttaacagtgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
38325376 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38325377 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
38325476 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38325477 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
38325576 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38325577 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
38325676 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38325677 |
gaaaaagggtgatttatt |
38325694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 46076050 - 46075640
Alignment:
| Q |
13 |
ggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagacaggagtgggaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46076050 |
ggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgagtttacagtaaaggttgttgagacaggagtgggaag |
46075951 |
T |
|
| Q |
113 |
aaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcattaaacacaacatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46075950 |
aaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataagataattttacctcattaaacacaacatct |
46075851 |
T |
|
| Q |
213 |
ttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaatgaaaatcaaact |
312 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46075850 |
ttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactattggaatatcccaagaaaacacactcctttgaatgaaaatcaaact |
46075751 |
T |
|
| Q |
313 |
tatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaagg-----aatttatagtctggaaattgaaggtgaagtaagaaaaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46075750 |
tatgagagttatagggtctcaaaaagggaaaacatgcacggccaaaacttttaaggaatgaaatttatggtctggaaattgaaggtgaagtaagaaaaat |
46075651 |
T |
|
| Q |
408 |
ggtgatttatt |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
46075650 |
ggtgatttatt |
46075640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 33825033 - 33825449
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
33825033 |
atgagaagtttgagg-agtaggtgagctaacaatgtgaggaacagactcaaaatgagaattttagggagtatgtgagtttacagtaaaggttgttgagac |
33825131 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33825132 |
aggagtgggaagaaaagtggatatagtgggactatctggtaaaacagaacacacttaatgagatggaaacaagtcaatataagggaattttacctcatta |
33825231 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33825232 |
aacacaacatctttggatataaaaattctacctgaagcatataaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
33825331 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33825332 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacatccaaagcttttaaggaatttttagtctggaaattgaaggtgaagtaa |
33825431 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
33825432 |
gaaaaatggtgatttatt |
33825449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 55491316 - 55490916
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55491316 |
atgagaagtttgggg-agtaggcgagttaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgagtttacagtaaaggttgttgagac |
55491218 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55491217 |
aggagtgggaagaaaagtgg---------gaccatctggtaaaacagaacacactttctgagatggaaacaag--aagataagggaattttacctcatta |
55491129 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
55491128 |
aacaca---tctttggatataaaaatgctacctgaagcatctaaacatttatatcctttgtgactgttgaaatatcccaagaaaacacactcctttgaat |
55491032 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55491031 |
gaaaatcaaacttatgag--ttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
55490934 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
55490933 |
gaaaaagggtgatttatt |
55490916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 46076112 - 46076029
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
46076112 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaacggactcaaaatgagaattttggggagtaggtgagttaacaat |
46076029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 46076127 - 46076080
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
46076127 |
aggaacagactcagaatgagaagtttggggagtaggtgagttaacaat |
46076080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 55491331 - 55491284
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| ||||| ||||| |
|
|
| T |
55491331 |
aggaacagactcagaatgagaagtttggggagtaggcgagttaacaat |
55491284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 38325263 - 38325304
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtt |
79 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
38325263 |
aggaacagactcggaatgagaagtttggggagtaggtgagtt |
38325304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 52606630 - 52607046
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
52606630 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagacttagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
52606728 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52606729 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
52606828 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52606829 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
52606928 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52606929 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
52607028 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
52607029 |
gaaaaagggtgatttatt |
52607046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 52888879 - 52888463
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
52888879 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgagtttacagtaaaggttgttaagac |
52888781 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52888780 |
aggagtgggaagaaaagtggataaagtggagccatctggaaaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
52888681 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52888680 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
52888581 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52888580 |
gaaaatcaaacttatgatagttacagggtctcaaaaagggaaaacatgcacagccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
52888481 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
52888480 |
gaaaaaaggtgatttatt |
52888463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 29889540 - 29889123
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29889540 |
atgagaagtttgggg-agtaggtgagctaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgagtttatagtaaaggttgttgagac |
29889442 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
29889441 |
aggagtgggaagagaaatggataaagtgggaccatatggtaaaacagaacacactttctgagatggaaacaagtgaagataagagaattttacctcatta |
29889342 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29889341 |
aacacaacatctttggatataaaaattctacctgaagcatttaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
29889242 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagc-ttttaaggaatttatagtctggaaattgaaggtgaagta |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29889241 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacagccaaagctttttaaggaatttatagtctggaaattgaaggtgaagta |
29889142 |
T |
|
| Q |
400 |
agaaaaagggtgatttatt |
418 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29889141 |
agaaaaagggtgatttatt |
29889123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 13730990 - 13730890
Alignment:
| Q |
288 |
cactcatttgaatgaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaatt |
387 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||| |||||| |||||||| || || || || |||| |||||||| ||| ||||||||||| || ||||||| |
|
|
| T |
13730990 |
cactcttttgagtgaaaatcaaccttttgactgttataaggtctcaagaaagggaagcaggcacaaccaaagcatttgaggaatttataatcaggaaatt |
13730891 |
T |
|
| Q |
388 |
g |
388 |
Q |
| |
|
| |
|
|
| T |
13730890 |
g |
13730890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 29889555 - 29889516
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgag |
77 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
29889555 |
aggaacagactcagaatgagaagtttggggagtaggtgag |
29889516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 52888894 - 52888847
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
52888894 |
aggaacacactcagaatgagaagtttggggagtaggtgagttaacaat |
52888847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 44200597 - 44200183
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
44200597 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaccagactcagaatgagaattttggggagtatgtgagtttacagtaaaggttgttgagac |
44200499 |
T |
|
| Q |
101 |
aggagtgggaagaaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44200498 |
aggagtgggaagaaaagtggataaagtgggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataaggaaattttacctcatta |
44200399 |
T |
|
| Q |
201 |
aacacaacatctttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44200398 |
aacacaacatctttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcctttgaat |
44200299 |
T |
|
| Q |
301 |
gaaaatcaaacttatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200298 |
gaaaatcaaacttat--gagttatagggtctcaaaaagggaaaacatgcacaaccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaa |
44200201 |
T |
|
| Q |
401 |
gaaaaagggtgatttatt |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44200200 |
gaaaaagggtgatttatt |
44200183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 44200612 - 44200565
Alignment:
| Q |
38 |
aggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
44200612 |
aggaacagactcggaatgagaagtttggggagtaggtgagttaacaat |
44200565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 26350546 - 26350607
Alignment:
| Q |
354 |
ccaaagcttttaaggaatttatagtctggaaattgaaggtgaagtaagaaaaagggtgattt |
415 |
Q |
| |
|
||||||||||| | ||||| || || || |||||||| ||||||||||||||||||||||| |
|
|
| T |
26350546 |
ccaaagcttttgaaaaatttgtaatcagggaattgaagatgaagtaagaaaaagggtgattt |
26350607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1270 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: scaffold1270
Description:
Target: scaffold1270; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 1693 - 2103
Alignment:
| Q |
13 |
ggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaataaaggttgttgagacaggagtgggaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1693 |
ggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgagtttacagtaaaggttgttgagacaggagtgggaag |
1792 |
T |
|
| Q |
113 |
aaaagtggataaagtgggaccatctgataaaacagaacacactttctgagatggaaacaagtcaagataagggaattttacctcattaaacacaacatct |
212 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1793 |
aaaagtggataaagtaggaccatctggtaaaacagaacacactttctgagatggaaacaagtcaagataagaaaattttacctcattaaacacaacatct |
1892 |
T |
|
| Q |
213 |
ttggatataaaaattatacctgaaacatctaaacatttatatcctttgtgactgttggaatatcccaagaaaacacactcatttgaatgaaaatcaaact |
312 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
1893 |
ttggatataaaaattctacctgaagcatctaaacatttatatcctttgtgactattggaatatcccaagaaaacacactccttaaaatgaaaatcaaact |
1992 |
T |
|
| Q |
313 |
tatgagagttatagggtctcaaaaagggaaaacatgcacgaccaaagcttttaagg-----aatttatagtctggaaattgaaggtgaagtaagaaaaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1993 |
tatgagagttatagggtctcaaaaagggaaaacatgcacggccaaaacttttaaggaatgaaatttatggtctggaaattgaaggtgaagtaagaaaaat |
2092 |
T |
|
| Q |
408 |
ggtgatttatt |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
2093 |
ggtgatttatt |
2103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1270; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1631 - 1714
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
1631 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaacggactcaaaatgagaattttggggagtaggtgagttaacaat |
1714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1270; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 1619 - 1663
Alignment:
| Q |
41 |
aacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
1619 |
aacagactcagaatgagaagtttggggagtaggtgagttaacaat |
1663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1635 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold1635
Description:
Target: scaffold1635; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 121 - 38
Alignment:
| Q |
1 |
atgagaagtttgggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagtaggtgagtttacaat |
85 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
121 |
atgagaagtttgggg-agtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagtaggtgagttaacaat |
38 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1635; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 59 - 1
Alignment:
| Q |
13 |
ggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaatttttgggagta |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
59 |
ggggagtaggtgagttaacaatgtgaggaacagactcagaatgagaattttggggagta |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 525 - 622
Target Start/End: Original strand, 28604 - 28701
Alignment:
| Q |
525 |
gttgacccgttatgtcatctctaataacaattaaaattctataatgttgatgagtttgaagcaacaacttgagcctacttgcattcagaaataggata |
622 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
28604 |
gttgacccgttttgtcatccctaataacaattaaaattctataatgctggtgagtttgaagcaacaacttgagccaccttgcattccgaaatatgata |
28701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 28534 - 28599
Alignment:
| Q |
417 |
ttgcaagacaacatgttagcaaacccttaagcaagttaggttgaaaatctcataccactttctttc |
482 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28534 |
ttgctagacaacatattagcaaacccttaagcaagttaggttgaaaatctcataccactttctttc |
28599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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