View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_low_66 (Length: 238)
Name: NF15178_low_66
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36730940 - 36730719
Alignment:
| Q |
1 |
cattactctttccagaaagaaagnnnnnnnntctcatagtaagatacagaccaatgaagttgaagaaacatgacttgtctttgactccaacgattggtac |
100 |
Q |
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| T |
36730940 |
cattactctttccagaaagaaagaaaaaaaatctcatagtaagatacagaccaatgaagttgaagaaacatgacttgtctttgactccaacgattggtac |
36730841 |
T |
|
| Q |
101 |
ggtctcttactttggaaaggaggtgtccaaagtccaagttatatttaaagactactcagaagatttaagataaatactcttgtagaaagggagattgatg |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36730840 |
ggtctcttacttgggaaaggaggtgtccaaagtccaagttatatttaaagactactcagaagatttaagataaatactcttgtagaaagggagattgatg |
36730741 |
T |
|
| Q |
201 |
tgattataaccttaatcttaat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36730740 |
tgattataaccttaatcttaat |
36730719 |
T |
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