View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15178_low_7 (Length: 634)
Name: NF15178_low_7
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Complemental strand, 22923539 - 22922954
Alignment:
| Q |
18 |
ataatatggatggatcgaatccatttgacatatttctaaaatcctatggatcacataattttttaaaatgaaatccaaaaaattatatttatttattgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22923539 |
ataatatggatggatcgaatccatttgacagatttctaaaatcctatcgatcacataattttttaaaatgaaatccaacaaattatatttatttattgta |
22923440 |
T |
|
| Q |
118 |
atagatacactnnnnnnntattactataattctattcaaataatttattaatttcgccatcaannnnnnnattaatttactagaaaattgatattagaga |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22923439 |
atagatacactaaaaaaatattactataattctattcaaataatttattaatttcgccatcaatttttttattaatttactagaaaattgatattagaga |
22923340 |
T |
|
| Q |
218 |
cggaaaaaatccgcatataaaatactaaatttttaataggtttcagaggctgttatttgactgaaaataagtggtggacattggcagagatgatttatta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22923339 |
cggaaaaaatccgcatataaaatactaaatttttaataggtttcagaggctgttatttgactgaaaataagtggtggacattggcagagattatttatta |
22923240 |
T |
|
| Q |
318 |
gggt-ggggtgagggtggcgaggcttggatgtggcgtcgtagattgttggaatgggaggagggccaggtaaaggagtgtaggattttacttgatgatgtg |
416 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
22923239 |
aggtgggggtgagggtggcgaggcttggacgtggcgtcgtagattgttggtatgggaagaggaccagttaaaggagtggaggattttacttgatgatgtg |
22923140 |
T |
|
| Q |
417 |
tcattacaagttg----atatttaggatatttggcgttagaaactcga--cgaagacatgatatttggtgcatggagtgtaatgttttcttaccagtcaa |
510 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
22923139 |
tcattacaagttgatatatatttaggatatttggcattggaaactcgattcgaagacatgatatttggtgcatcgagtgtaaagttttcttaccagtcaa |
22923040 |
T |
|
| Q |
511 |
gaaccagagcactttacatctatgtcagaatatacttgacataaggatgttcctttaaatgtatctttgtttgcttgactattatt |
596 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22923039 |
gaaccagaacactttacatctatgtcagaacatacttgacataaggatgttcctttaaatgtatctttgtttgcttgattattatt |
22922954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 394 - 606
Target Start/End: Original strand, 22923854 - 22924068
Alignment:
| Q |
394 |
gtaggattttacttgatgatgtgtcattacaagttgatatttaggatatttggcgttagaaactcgac--gaagacatgatatttggtgcatggagtgta |
491 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
22923854 |
gtaggattttacttcatgatgtgtcattgcaagttgatatttaggatatttggtgttggaaactcgatttgacgacatgatatttggtacgtggagtgta |
22923953 |
T |
|
| Q |
492 |
atgttttcttaccagtcaagaaccagagcactttacatctatgtcagaatatacttgacataaggatgttcctttaaatgtatctttgtttgcttgacta |
591 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22923954 |
cagttttcttaccagccaagaacgagagcactttacatcgatgtcagaatatacttgacataaggatgttcctttaaatgtatctttgtttgcttgacta |
22924053 |
T |
|
| Q |
592 |
ttatttcgtaatagg |
606 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
22924054 |
ttattccgcaatagg |
22924068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 11527727 - 11527784
Alignment:
| Q |
321 |
tggggtgagggtggcgaggcttggatgtggcgtcgtagattgttggaatgggaggagg |
378 |
Q |
| |
|
|||||||||||||||||||| || | ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
11527727 |
tggggtgagggtggcgaggcatgaaagtggcatcgtatgttgttggtatgggaggagg |
11527784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University