View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15178_low_8 (Length: 612)

Name: NF15178_low_8
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15178_low_8
NF15178_low_8
[»] chr5 (6 HSPs)
chr5 (375-533)||(18552691-18552849)
chr5 (98-220)||(18552297-18552424)
chr5 (532-594)||(18555631-18555689)
chr5 (129-207)||(19803974-19804052)
chr5 (156-207)||(1583728-1583779)
chr5 (129-195)||(17202192-17202258)
[»] chr1 (7 HSPs)
chr1 (383-478)||(9928427-9928522)
chr1 (375-478)||(35150651-35150754)
chr1 (375-434)||(26617752-26617811)
chr1 (129-195)||(2655951-2656017)
chr1 (129-207)||(10101512-10101590)
chr1 (149-207)||(23913472-23913530)
chr1 (129-195)||(32769211-32769277)
[»] chr4 (7 HSPs)
chr4 (96-195)||(33889816-33889921)
chr4 (130-205)||(24915571-24915646)
chr4 (129-195)||(45666546-45666611)
chr4 (129-196)||(49299647-49299714)
chr4 (403-476)||(3441858-3441931)
chr4 (129-197)||(25360907-25360975)
chr4 (129-195)||(45635236-45635302)
[»] chr7 (7 HSPs)
chr7 (129-195)||(4678618-4678684)
chr7 (374-456)||(12077809-12077891)
chr7 (129-195)||(39617738-39617804)
chr7 (136-199)||(27063550-27063613)
chr7 (129-195)||(2271667-2271733)
chr7 (129-219)||(1752417-1752503)
chr7 (375-479)||(9349041-9349144)
[»] chr6 (3 HSPs)
chr6 (131-207)||(31660664-31660740)
chr6 (130-207)||(31658828-31658905)
chr6 (149-209)||(21014007-21014067)
[»] scaffold1327 (1 HSPs)
scaffold1327 (96-195)||(1005-1110)
[»] scaffold0008 (1 HSPs)
scaffold0008 (129-171)||(5055-5097)
[»] chr2 (1 HSPs)
chr2 (129-178)||(7486018-7486067)
[»] chr3 (2 HSPs)
chr3 (147-195)||(2094003-2094051)
chr3 (379-467)||(31609189-31609277)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 375 - 533
Target Start/End: Original strand, 18552691 - 18552849
Alignment:
Q  375 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaa 474  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  18552691 tattctttggagcatgtggaaacatcgaaaccttaaaatttaggagaatgagaatgagttatgtgcaaatgttgtcgatagagaacgtcatcttatagaa 18552790  T
Q  475 gacttaaagtacctccaagctcctccaattgttcacactagaagtatggtgtcgtccag 533  Q
    ||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  18552791 gacttgatgtacctccaagctcctccgattgttcacactagaagtatggtgtcatccag 18552849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 18552297 - 18552424
Alignment:
Q  98 ataaaaattattccaacttcacaataaccata------gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaac 191  Q
    ||||||||||||||||||||||||||| || |      |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18552297 ataaaaattattccaacttcacaataatcaaaatttaagaaaaatttaattt-cctccaactcatttaatcaaagttaagacttgaattatgaattcaac 18552395  T
Q  192 caatactaaattcacaatctgtgacgtat 220  Q
    |||||||||||||||| | ||||||||||    
T  18552396 caatactaaattcacactatgtgacgtat 18552424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 532 - 594
Target Start/End: Original strand, 18555631 - 18555689
Alignment:
Q  532 agatgatttagtggcagaaatagccggtatatatctagaaatttgtaccccgagagaatagtt 594  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  18555631 agatgattttgtggcagaaatagccggtat----ctagaaatttgtaccccgagagaatagtt 18555689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 19804052 - 19803974
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 207  Q
    |||||||||||| |||| |||||||| |||||| ||||||||| |||||| ||||  || ||||||| ||| |||||||    
T  19804052 agaaaaatttaactttcttccaactcctttaatcaaagttaaggcttcaactatggcttaaaccaatgctagattcaca 19803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 1583779 - 1583728
Alignment:
Q  156 tttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 207  Q
    |||||| |||||||||||||||| ||||  |||||||||| |||||||||||    
T  1583779 tttaatcaaagttaagacttcaaatatggcttcaaccaatgctaaattcaca 1583728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 17202192 - 17202258
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    ||||||| |||| |||| | |||||  ||||||||||||||||||||||| ||||  ||||||||||    
T  17202192 agaaaaaattaactttctttcaacttctttaattaaagttaagacttcaactatggcttcaaccaat 17202258  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 478
Target Start/End: Original strand, 9928427 - 9928522
Alignment:
Q  383 ggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaagact 478  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9928427 ggagtttgtggaagcatcgaaaccttaaactttgggaaaatgaaaatgagttatgtgcaaatgttgtcgatagagcacgtcatcttatagaagact 9928522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 375 - 478
Target Start/End: Original strand, 35150651 - 35150754
Alignment:
Q  375 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaa 474  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  35150651 tattctttggagtctgtggaagcatcgaaaccttaaactttgggagaatgaaaatgagttgtgtgcaaatgttgtcgatagagcacatcatcttatagaa 35150750  T
Q  475 gact 478  Q
    ||||    
T  35150751 gact 35150754  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 26617752 - 26617811
Alignment:
Q  375 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagtt 434  Q
    |||| |||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||    
T  26617752 tattctttggagtctatggaagcattgaaaccttaaactttgggagaatgaaaatgagtt 26617811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 2656017 - 2655951
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    |||||||  ||| ||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||||||    
T  2656017 agaaaaaaataactttcctccaactcctttaatcaaaattaaggcttcaactatgacttcaaccaat 2655951  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 10101512 - 10101590
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 207  Q
    |||||||||||| |||||| |||||||||| |  |||||||||  ||||| ||||  ||||||| |||||| |||||||    
T  10101512 agaaaaatttaactttccttcaactcattttaccaaagttaagttttcaactatggtttcaaccgatactatattcaca 10101590  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 23913530 - 23913472
Alignment:
Q  149 caactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 207  Q
    ||||| ||||||| |||||||||||||||| ||||  ||||||||||| || |||||||    
T  23913530 caacttatttaatcaaagttaagacttcaactatggtttcaaccaatattagattcaca 23913472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 32769277 - 32769211
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    ||||||| |||| ||||||||||||| |||||| ||| |||||  ||||| ||||| ||||||||||    
T  32769277 agaaaaaattaactttcctccaactcctttaatcaaaattaaggtttcaactatgacttcaaccaat 32769211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 33889921 - 33889816
Alignment:
Q  96 atataaaaattattccaacttcacaataaccata------gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattca 189  Q
    ||||||||||||||||||||||||| ||| || |      |||||| |||| ||||||||||||| |||||| ||| |||||||||||| ||||| ||||    
T  33889921 atataaaaattattccaacttcacattaatcaaaagttaagaaaaaattaactttcctccaactcctttaatcaaaattaagacttcaactatgacttca 33889822  T
Q  190 accaat 195  Q
    ||||||    
T  33889821 accaat 33889816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 24915646 - 24915571
Alignment:
Q  130 gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattca 205  Q
    ||||||||||| ||||||||||||  |||||| ||||||||| |||||| ||||  |||||||||||||| |||||    
T  24915646 gaaaaatttaactttcctccaacttctttaatcaaagttaaggcttcaactatggtttcaaccaatactagattca 24915571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 45666611 - 45666546
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||  ||||||||||    
T  45666611 agaaaaaattaattttc-tccaactcctttaattaaagttaagacttcaactatggcttcaaccaat 45666546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 49299647 - 49299714
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaata 196  Q
    ||||||| ||||  ||| ||||||||||||||||||||||||| |||||| ||||  |||||||||||    
T  49299647 agaaaaaattaaccttcttccaactcatttaattaaagttaaggcttcaactatggcttcaaccaata 49299714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 3441858 - 3441931
Alignment:
Q  403 aaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaaga 476  Q
    ||||||||||||||| ||||||| ||||| |||||||| ||||||||  ||||||| || || || ||||||||    
T  3441858 aaccttaaactttggaagaatgataatgaattatgtgccaatgttgtcaatagagcgcgccaactaatagaaga 3441931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 25360907 - 25360975
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatac 197  Q
    |||||||||||| ||||||||| ||  |||||| ||||||||| |||||| ||||  ||||||||||||    
T  25360907 agaaaaatttaactttcctccagcttctttaatcaaagttaaggcttcaactatggtttcaaccaatac 25360975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 45635236 - 45635302
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    |||||||  ||| ||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||||||    
T  45635236 agaaaaaaataactttcctccaactcctttaatcaaaattaaggcttcaactatgacttcaaccaat 45635302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 4678684 - 4678618
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    ||||||| |||| ||||||||||||| |||||| ||| |||||||||| ||||||| ||||||||||    
T  4678684 agaaaaagttaactttcctccaactcctttaatcaaaattaagacttcgattatgacttcaaccaat 4678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 374 - 456
Target Start/End: Complemental strand, 12077891 - 12077809
Alignment:
Q  374 ttattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgataga 456  Q
    |||||||||||||| | | ||| ||||  |||||||||| |||| |||||||||||||||||  |||||||||||| ||||||    
T  12077891 ttattttttggagtctctagaagcatcataaccttaaacattggaagaatgaaaatgagttaattgcaaatgttgtcgataga 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 39617804 - 39617738
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    ||||||| |||| |||| |||||||| |||||||||||||||| |||||| ||||| ||||||||||    
T  39617804 agaaaaaattaactttcttccaactcctttaattaaagttaaggcttcaactatgacttcaaccaat 39617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 27063550 - 27063613
Alignment:
Q  136 tttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatacta 199  Q
    ||||| ||||||||||||| |||||| ||||||||| |||||| ||||  ||||||||||||||    
T  27063550 tttaactttcctccaactcctttaatcaaagttaaggcttcaactatggtttcaaccaatacta 27063613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 2271667 - 2271733
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    ||||||| |||| |||| |||||||  ||||||||||||||||||||||| ||||| ||||| ||||    
T  2271667 agaaaaaattaactttcttccaacttctttaattaaagttaagacttcaactatgacttcaatcaat 2271733  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 1752417 - 1752503
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcacaatctgtgacgta 219  Q
    |||||||||||| |||| ||||||||||||||| |||||||    ||||| | ||| ||||||||||| || ||||||| | |||||||||    
T  1752417 agaaaaatttaactttcttccaactcatttaatcaaagtta----ttcaactgtgatttcaaccaatattagattcacactatgtgacgta 1752503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 479
Target Start/End: Original strand, 9349041 - 9349144
Alignment:
Q  375 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaa 474  Q
    |||| |||||||| |  |||||||||  ||||||||||||||| ||| | ||||||  ||||||||||||| |  | ||||| ||||||| |||||||||    
T  9349041 tattctttggagtcttcggaaacatcagaaccttaaactttggaagagttaaaatgcattatgtgcaaatgct-ataatagatcacgtcagcttatagaa 9349139  T
Q  475 gactt 479  Q
    |||||    
T  9349140 gactt 9349144  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 31660740 - 31660664
Alignment:
Q  131 aaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 207  Q
    |||||||||| ||||||||||||  |||||| |||| ||||||||||| ||||  |||||| ||||||| |||||||    
T  31660740 aaaaatttaactttcctccaacttctttaatcaaagctaagacttcaactatggtttcaacaaatactagattcaca 31660664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 31658905 - 31658828
Alignment:
Q  130 gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 207  Q
    ||||||||||| ||| ||| ||||| |||||| |||||||||  ||||| ||||  |||||||||||||| |||||||    
T  31658905 gaaaaatttaacttttctctaactcctttaatcaaagttaaggtttcaactatggtttcaaccaatactagattcaca 31658828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 21014007 - 21014067
Alignment:
Q  149 caactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcacaat 209  Q
    |||||| |||||| ||| |||||||||||| ||||  ||| |||||||||| |||||||||    
T  21014007 caactcctttaatcaaaattaagacttcaactatggtttccaccaatactagattcacaat 21014067  T

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Target: scaffold1327 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 1110 - 1005
Alignment:
Q  96 atataaaaattattccaacttcacaataaccata------gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattca 189  Q
    ||||||||||||||||||||||||| ||  || |      |||||| |||| |||| ||||||||  ||||||||||||||| |||||| ||| | ||||    
T  1110 atataaaaattattccaacttcacattattcaaaagttaggaaaaaattaactttcttccaactccattaattaaagttaaggcttcaactattacttca 1011  T
Q  190 accaat 195  Q
    ||||||    
T  1010 accaat 1005  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 5055 - 5097
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaag 171  Q
    |||||||||||| ||||||||||||| |||||| |||||||||    
T  5055 agaaaaatttaactttcctccaactcctttaatcaaagttaag 5097  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 7486018 - 7486067
Alignment:
Q  129 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaa 178  Q
    ||||||| |||| ||||||||||||| |||||| ||||||||| ||||||    
T  7486018 agaaaaaattaactttcctccaactcctttaatcaaagttaaggcttcaa 7486067  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 2094051 - 2094003
Alignment:
Q  147 tccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 195  Q
    |||||||  |||||||||||||||| |||||| ||||| ||||||||||    
T  2094051 tccaacttctttaattaaagttaaggcttcaactatgacttcaaccaat 2094003  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 31609189 - 31609277
Alignment:
Q  379 ttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatct 467  Q
    ||||||||| | ||||| || ||||||||||   | ||| || ||||||||||| | || || |||||||||||||||||||| |||||    
T  31609189 ttttggagtttatggaagcaccgaaaccttatgatatggaaggatgaaaatgagatgtgcgctaatgttgttgatagagcacgccatct 31609277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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