View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15179_low_2 (Length: 320)
Name: NF15179_low_2
Description: NF15179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15179_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 8909736 - 8910024
Alignment:
| Q |
18 |
aattgttccatatggtactgcatatatatacaactagtattttaaggtcacttatgcttttttgagaagaaattatgaaacagatatgtgatcatgagtt |
117 |
Q |
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| T |
8909736 |
aattgttccatatggtactgcatatatatacaactagtattttaaggtcacttatgcttttttgagaagaaattataaaacagatatgtgatcatgagtt |
8909835 |
T |
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| Q |
118 |
agggaaaccaccatgaaaggttgattatctgatctgaatataatgttgggaatttctcttagccatattggtaattctctgaaaagtaaccaataaaacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909836 |
agggaaaccaccatgaaaggttgattatctgatctgaatataatgttgggaatttctcttagccatattggtaattctctgaaaagtaaccaataaaacg |
8909935 |
T |
|
| Q |
218 |
agattaaggaaagatttgtggtaagnnnnnnnnnnnnnttggtagacaaatgtcagcatattaattgttatgttagtatcttctccttc |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909936 |
agattaaggaaagatttgtggtaagaaaaaaataaaaattggtagacaaatgtcagcatattaattgttatgttagtatcttctccttc |
8910024 |
T |
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