View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15179_low_3 (Length: 309)

Name: NF15179_low_3
Description: NF15179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15179_low_3
NF15179_low_3
[»] chr3 (3 HSPs)
chr3 (1-104)||(37490670-37490774)
chr3 (103-185)||(37490505-37490587)
chr3 (210-293)||(37489999-37490082)
[»] chr2 (4 HSPs)
chr2 (1-100)||(15990909-15991005)
chr2 (103-185)||(3210836-3210918)
chr2 (4-100)||(3210654-3210750)
chr2 (103-166)||(15990759-15990822)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 37490774 - 37490670
Alignment:
Q  1 tctactattgactctatattaaa-ccgtacataaacctgcaggaatcaagatatagaagaagtattaggtgaatagaataaagtacaaggaacacaccca 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  37490774 tctactattgactctatattaaaaccgtacataaacctgcaggaatcaagatatagaagaagtattaggtgaatagaataaagtataaggaatacaccca 37490675  T
Q  100 cggag 104  Q
    |||||    
T  37490674 cggag 37490670  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 37490587 - 37490505
Alignment:
Q  103 aggaacattagtatattaaacaaattaatcatggcaagaatgaatattcagcaaacagagcatacttatatgacacggtttac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37490587 aggaacattagtatattaaacaaattaatcatggcaagaatgaatattcagcaaacagagcatacttatatgacacggtttac 37490505  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 37490082 - 37489999
Alignment:
Q  210 agctgatagcttttagctgttagcttataagcttgtttgacnnnnnnngctctgtttgttaaagattttccaccacgagcttat 293  Q
    |||| ||||||| |||||| |||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||    
T  37490082 agcttatagcttatagctgatagcttataagcttgtttgacaaaaaaagctctatttgttaaagattttccaccacgagcttat 37489999  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 15991005 - 15990909
Alignment:
Q  1 tctactattgactctatattaaaccgtacataaacctgcaggaatcaagatatagaagaagtattaggtgaatagaataaagtacaaggaacacacccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||| |||||||||||||||    
T  15991005 tctactattgactctatattaaaccgtacataaacctgcaggaatcaagatata---gaagtattagctgaatagaataaagtataaggaacacacccac 15990909  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 3210836 - 3210918
Alignment:
Q  103 aggaacattagtatattaaacaaattaatcatggcaagaatgaatattcagcaaacagagcatacttatatgacacggtttac 185  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  3210836 aggaacattagtatattaaacaaattaatcgtgacaagaatgaatattcagcaaacagagcataattatgtgatacggtttac 3210918  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 3210654 - 3210750
Alignment:
Q  4 actattgactctatattaaaccgtacataaacctgcaggaatcaagatatagaagaagtattaggtgaatagaataaagtacaaggaacacacccac 100  Q
    |||||||||| || |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||   |||||||||||||||    
T  3210654 actattgactttacattaaaccgtacataaacctacaggattcaagatacagaagaagtattagctgaatagaataaagagtaaggaacacacccac 3210750  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 15990822 - 15990759
Alignment:
Q  103 aggaacattagtatattaaacaaattaatcatggcaagaatgaatattcagcaaacagagcata 166  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15990822 aggaacgttagtatataaaacaaattaatcatggcaagaatgaatattcagtaaacagagcata 15990759  T

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