View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_high_1 (Length: 527)
Name: NF1517_high_1
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 22882430 - 22882194
Alignment:
| Q |
16 |
atataataacaatccttcagattcagacagaatcaactaagtagaatgaaatggcattcttcattcctctgttcaggaccatcagagactcttaattgct |
115 |
Q |
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| T |
22882430 |
atataataacaatccttcagattcagacagaatcaactaagtagaatgaaatggcattcttcattcctctgttcaggaccatcagagactcttaattgct |
22882331 |
T |
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| Q |
116 |
gtgctaactttgaggatcgcgtctattcctaattgttgtcactcatccttatggaatcggatagtattttcatgctctcatggctctaggagtagcactt |
215 |
Q |
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| T |
22882330 |
gtgctaactttgaggatcgcgtctattactaattgttgtcactcatccttatggaatcggatagtattttcatgctctcatggctctaggagtagcactt |
22882231 |
T |
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| Q |
216 |
ttgctgccttgaatgccttctattctcttggttaatt |
252 |
Q |
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| T |
22882230 |
ttgctgccttgaatgccttctattctcttggttaatt |
22882194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 249 - 515
Target Start/End: Complemental strand, 22882130 - 22881862
Alignment:
| Q |
249 |
aattgatctgactagttagttacgtccgctatcgcaacaaagtgtggtataacagtccttaggcgttgtccaagaacctggaacattgctaaaaatctga |
348 |
Q |
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| T |
22882130 |
aattgatctgactagttagttacgtccgctatcgcaacaaagtgtggtataacagtccttaggcgttgtgcaagaacctgtaacattgctaacaatctga |
22882031 |
T |
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| Q |
349 |
taactactgtagtggcaacattgaaaacccgatttacccacaattgatagctgtgc--tannnnnnnnggggacttttgaaataggtttgtgcatctgct |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
22882030 |
taactactgtagtggcaacattgaaaacccgatttacccacaattgatagctgtgctttttttttttgggggacttttgaaataggtttgtgcatctgct |
22881931 |
T |
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| Q |
447 |
ctatactcacttgttttcgtaagtaaaacggcaaaacgcaggcgtctgctcgtcactcttcattatatt |
515 |
Q |
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| T |
22881930 |
ctatactcacttgttttcgtaagtaaaacggcaaaacgcaggcgtctgctcgtcactctttattatatt |
22881862 |
T |
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