View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1517_high_16 (Length: 236)
Name: NF1517_high_16
Description: NF1517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1517_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48399215 - 48398988
Alignment:
| Q |
1 |
atagtgtcaaacacctcattatggtgccattaatattatgggtcattgggtcccacgtctttttggctagtgccacggtctttctcattcgatgtatgct |
100 |
Q |
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| T |
48399215 |
atagtgtcaaacacctcattatggtgccattaatattatgggtcattgggtcccacgtctttttggctagtgccacggtctttctcattcgatgtatgct |
48399116 |
T |
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| Q |
101 |
atgccatgta--------cgagtagtttagagtttttaaaatatttcaaaggaaaatgttaatatactaaaatcaaaattaataacatatgtcgaaagac |
192 |
Q |
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| T |
48399115 |
atgccatgtatgtacgagtgagtagtgtagagtttttaaaatatttcaaaggaaaatgttaatatactaaaatcaaaattaataacatatgtcgaaagac |
48399016 |
T |
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| Q |
193 |
atgtgttagcgttacattatttcaaata |
220 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48399015 |
atgtgttagcgttacattatttcaaata |
48398988 |
T |
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